RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TNFSF13BQ9Y275 285 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 EFR3BQ9Y2G0 817 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 CITO14578 2027 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 A0A1W2PPM1 405 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PRPF4O43172 522 aaKnown RBP eCLIP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PIAS1O75925 651 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 MICAL2O94851 1124 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 IL18RAPO95256 599 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 KRT15P19012 456 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 GSCP56915 257 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 KCNJ2P63252 427 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 IL9RQ01113 521 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PTPN11Q06124 597 aaPredicted RBP10.35□□□□□ -0.75
CLIP1-204ENST00000501271 MTM1Q13496 603 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 FNBP1LQ5T0N5 605 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 EXOC8Q8IYI6 725 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 RNPEPQ9H4A4 650 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 ECT2Q9H8V3 914 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 IFT122Q9HBG6 1241 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 UBN1Q9NPG3 1134 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PDGFCQ9NRA1 345 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 PCDH10Q9P2E7 1040 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 TRIP11Q15643 1979 aa10.35□□□□□ -0.75
CLIP1-204ENST00000501271 DNAJC25-GNG10A0A024R161 153 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 TCRBV7S3A2A0A539 114 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 M0QYV0 167 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 HGSO14964 777 aaPredicted RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 CILPO75339 1184 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 TMEM63AO94886 807 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 C22orf31O95567 290 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 ATP6V1G2O95670 118 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 STAG3L1P0CL83 205 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 MIPP30301 263 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SSTR1P30872 391 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RPA3P35244 121 aaPredicted RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RPL22P35268 128 aaKnown RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 NRLP54845 237 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 IGBP1P78318 339 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 MYO1EQ12965 1108 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 BNIP1Q12981 228 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 DNAJC3Q13217 504 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 HADHQ16836 314 aaKnown RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 EFHC2Q5JST6 749 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 ECHDC2Q86YB7 292 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 UNC45BQ8IWX7 931 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PPIL6Q8IXY8 311 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 NAT8LQ8N9F0 302 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 HSPH1Q92598 858 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PITPNM3Q9BZ71 974 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SMARCAD1Q9H4L7 1026 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RXFP1Q9HBX9 757 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RBPJLQ9UBG7 517 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RABGEF1Q9UJ41 708 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 CFAP73A6NFT4 308 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 HBP1O60381 514 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SLC25A27O95847 323 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 TXNP10599 105 aaKnown RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RAB6CQ53S08 254 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PCGF5Q86SE9 256 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RFX6Q8HWS3 928 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 MCRS1Q96EZ8 462 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 TMEM176AQ96HP8 235 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 CPB2Q96IY4 423 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PEBP4Q96S96 227 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SMC6Q96SB8 1091 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 MMP19Q99542 508 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 MPHOSPH6Q99547 160 aaKnown RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SGIP1Q9BQI5 828 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 MAK16Q9BXY0 300 aaKnown RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 RAB6CQ9H0N0 254 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SLCO1B3Q9NPD5 702 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 WDR35Q9P2L0 1181 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PSMC3IPQ9P2W1 217 aaPredicted RBP10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SLC24A2Q9UI40 661 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 SBF1O95248 1867 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PLXNA1Q9UIW2 1896 aa10.34□□□□□ -0.75
CLIP1-204ENST00000501271 PIK3R2O00459 728 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 NDC80O14777 642 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 MAGEB2O15479 319 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 TYROBPO43914 113 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 NQO1P15559 274 aaKnown RBP10.33□□□□□ -0.76
CLIP1-204ENST00000501271 GPD2P43304 727 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 SLC26A2P50443 739 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 SLC18A1P54219 525 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 GEMIN4P57678 1058 aaKnown RBP10.33□□□□□ -0.76
CLIP1-204ENST00000501271 ZNF268Q14587 947 aaPredicted RBP10.33□□□□□ -0.76
CLIP1-204ENST00000501271 KCTD2Q14681 263 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 SLC1A5Q15758 541 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 AMHR2Q16671 573 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 FAM182AQ5T1J6 154 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 GJC2Q5T442 439 aaPredicted RBP10.33□□□□□ -0.76
CLIP1-204ENST00000501271 SH3PXD2AQ5TCZ1 1133 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 RNF43Q68DV7 783 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 TRNP1Q6NT89 227 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 MOB2Q70IA6 237 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 GBP7Q8N8V2 638 aaPredicted RBP10.33□□□□□ -0.76
CLIP1-204ENST00000501271 FAM71DQ8N9W8 422 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 TTC13Q8NBP0 860 aa10.33□□□□□ -0.76
CLIP1-204ENST00000501271 KCTD6Q8NC69 237 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms