RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CHCHD3Q9NX63 227 aaKnown RBP7.41□□□□□ -1.22
HDAC3-209ENST00000486618 SIRPGQ9P1W8 387 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 VTI1BQ9UEU0 232 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 USP25Q9UHP3 1055 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 CEP83Q9Y592 693 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 FAM208BQ5VWN6 2430 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 PATJQ8NI35 1801 aa7.41□□□□□ -1.22
HDAC3-209ENST00000486618 GOLGA6L3A6NEY3 463 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 ARL5CA6NH57 179 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 ASAP2O43150 1006 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 ERLIN2O94905 339 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 EFEMP2O95967 443 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 MPSTP25325 297 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 NOS3P29474 1203 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 AXLP30530 894 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 RPS9P46781 194 aaKnown RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SH3BGRP55822 239 aaPredicted RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SNX16P57768 344 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PSMC5P62195 406 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 AKAP17AQ02040 695 aaKnown RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 DSC1Q08554 894 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 NECTIN1Q15223 517 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PCBP1Q15365 356 aaKnown RBP eCLIP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PPM1LQ5SGD2 360 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 LIN9Q5TKA1 542 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 CEP135Q66GS9 1140 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 LMBRD2Q68DH5 695 aaPredicted RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 FUT10Q6P4F1 479 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PARM1Q6UWI2 310 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 ZNF438Q7Z4V0 828 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 GRASPQ7Z6J2 395 aaPredicted RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 KIAA0907Q7Z7F0 614 aaPredicted RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SNX32Q86XE0 403 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 KSR1Q8IVT5 923 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 Q8N3U1 123 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 APPL2Q8NEU8 664 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 CCDC148Q8NFR7 591 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 NETO1Q8TDF5 533 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PSPC1Q8WXF1 523 aaKnown RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 NELL1Q92832 810 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 FGF13Q92913 245 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 FGF14Q92915 247 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 TP53INP1Q96A56 240 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 CLDN23Q96B33 292 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 LENG9Q96B70 501 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 CCDC51Q96ER9 411 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 MBOAT7Q96N66 472 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SPAG5Q96R06 1193 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 RPP25Q9BUL9 199 aaKnown RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PHF20Q9BVI0 1012 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 LSG1Q9H089 658 aaKnown RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 PDCL3Q9H2J4 239 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SRA1Q9HD15 236 aaKnown RBP7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SH3GLB2Q9NR46 395 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 DCAF16Q9NXF7 216 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 SEL1LQ9UBV2 794 aa7.4□□□□□ -1.22
HDAC3-209ENST00000486618 ATRXP46100 2492 aa7.4□□□□□ -1.23
HDAC3-209ENST00000486618 CHD6Q8TD26 2715 aa7.4□□□□□ -1.23
HDAC3-209ENST00000486618 KLF18A0A0U1RQI7 1052 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 CPLX1O14810 134 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 SLC30A4O14863 429 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 PRPF3O43395 683 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 FOXD2O60548 495 aaPredicted RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 LRP3O75074 770 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 TADA2AO75478 443 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 PSMD10O75832 226 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 STBD1O95210 358 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 PDGFAP04085 211 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 H2AFB1P0C5Y9 115 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 H2AFB2P0C5Z0 115 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 SRGAP2CP0DJJ0 459 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 SETSIPP0DME0 302 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 NCAM1P13591 858 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 HOXA9P31269 272 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 HOXA11P31270 313 aaPredicted RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 EIF1AXP47813 144 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 DNM1Q05193 864 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 PPM1JQ5JR12 505 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 PRSS36Q5K4E3 855 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 UBXN11Q5T124 520 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 MFSD4BQ5TF39 518 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 LAIR1Q6GTX8 287 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 NOTUMQ6P988 496 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 ADAMTSL4Q6UY14 1074 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 ZNF852Q6ZMS4 543 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 TPRG1Q6ZUI0 275 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 CELF5Q8N6W0 485 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 SMG8Q8ND04 991 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 ST13P5Q8NFI4 369 aaPredicted RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 TTC8Q8TAM2 541 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 TCP11Q8WWU5 503 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 PRPF31Q8WWY3 499 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 DDX1Q92499 740 aaKnown RBP7.39□□□□□ -1.23
HDAC3-209ENST00000486618 GAD1Q99259 594 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 SH2D3AQ9BRG2 576 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 HERPUD2Q9BSE4 406 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 GPR62Q9BZJ7 368 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 RASSF4Q9H2L5 321 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 FBXW11Q9UKB1 542 aa7.39□□□□□ -1.23
HDAC3-209ENST00000486618 ADAM28Q9UKQ2 775 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms