RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TDRD10Q5VZ19 366 aaKnown RBP19.85■□□□□ 0.77
COL7A1-209ENST00000474432 SCN4BQ8IWT1 228 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 GOLGA5Q8TBA6 731 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 MYCBPAPQ8TBZ2 947 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 ELMO3Q96BJ8 720 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 MSANTD3Q96H12 275 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 DPEP3Q9H4B8 488 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 VRTNQ9H8Y1 702 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 HPS4Q9NQG7 708 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 GKN1Q9NS71 199 aa19.85■□□□□ 0.77
COL7A1-209ENST00000474432 MAGEC2Q9UBF1 373 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-209ENST00000474432 PDXKO00764 312 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 LILRB5O75023 590 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 RPN1P04843 607 aaKnown RBP19.84■□□□□ 0.77
COL7A1-209ENST00000474432 MYL1P05976 194 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 BDNFP23560 247 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 GNL1P36915 607 aaPredicted RBP19.84■□□□□ 0.77
COL7A1-209ENST00000474432 SYKP43405 635 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 KPNA1P52294 538 aaPredicted RBP19.84■□□□□ 0.77
COL7A1-209ENST00000474432 CACNA2D1P54289 1103 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 USP46P62068 366 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 DPYDQ12882 1025 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 C1orf220Q5T0J3 134 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 VSTM1Q6UX27 236 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 C4orf50Q6ZRC1 276 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 RALGPS2Q86X27 583 aaPredicted RBP19.84■□□□□ 0.77
COL7A1-209ENST00000474432 MRPS31Q92665 395 aaKnown RBP19.84■□□□□ 0.77
COL7A1-209ENST00000474432 SPATA17Q96L03 361 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 CYP2S1Q96SQ9 504 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 RBM12Q9NTZ6 932 aaKnown RBP19.84■□□□□ 0.77
COL7A1-209ENST00000474432 TDP1Q9NUW8 608 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 GCNT4Q9P109 453 aa19.84■□□□□ 0.77
COL7A1-209ENST00000474432 HELZP42694 1942 aaKnown RBP19.83■□□□□ 0.77
COL7A1-209ENST00000474432 A0A1W2PQ27 194 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 A0A1W2PQ64 194 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 A0A1W2PQD8 194 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 RHOBTB3O94955 611 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 ATICP31939 592 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 AVPR1AP37288 418 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 PLCB2Q00722 1185 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 ZNF268Q14587 947 aaPredicted RBP19.83■□□□□ 0.77
COL7A1-209ENST00000474432 MDH1BQ5I0G3 518 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 TRIM68Q6AZZ1 485 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 ZC3H14Q6PJT7 736 aaKnown RBP19.83■□□□□ 0.77
COL7A1-209ENST00000474432 SDCBP2Q9H190 292 aa19.83■□□□□ 0.77
COL7A1-209ENST00000474432 UXTQ9UBK9 157 aaPredicted RBP19.83■□□□□ 0.77
COL7A1-209ENST00000474432 NR3C1P04150 777 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 PTPN1P18031 435 aaKnown RBP19.82■□□□□ 0.76
COL7A1-209ENST00000474432 CDH8P55286 799 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 CYP27A1Q02318 531 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 MAPRE1Q15691 268 aaKnown RBP19.82■□□□□ 0.76
COL7A1-209ENST00000474432 KRBA2Q6ZNG9 492 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 Q6ZS52 159 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 OR6B3Q8NGW1 331 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 IER2Q9BTL4 223 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 TTLL2Q9BWV7 592 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 SCAND2PQ9GZW5 306 aaPredicted RBP19.82■□□□□ 0.76
COL7A1-209ENST00000474432 SNX25Q9H3E2 840 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 SMYD3Q9H7B4 428 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 KIF9Q9HAQ2 790 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 GDPD2Q9HCC8 539 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 C2orf42Q9NWW7 574 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 ZSCAN32Q9NX65 697 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 NXF1Q9UBU9 619 aaKnown RBP19.82■□□□□ 0.76
COL7A1-209ENST00000474432 TRAF3IP3Q9Y228 551 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 PCDHGA2Q9Y5H1 932 aa19.82■□□□□ 0.76
COL7A1-209ENST00000474432 FRYLO94915 3013 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 C2orf78A6NCI8 922 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 TNNC1P63316 161 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 ZXDBP98169 803 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 SATB1Q01826 763 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 TRPC3Q13507 836 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 CCINQ13939 588 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 PON2Q15165 354 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 ITPRIPL2Q3MIP1 535 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 ZACNQ401N2 412 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 C1orf228Q6PIY5 440 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 FSIP1Q8NA03 581 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 SYAP1Q96A49 352 aaPredicted RBP19.81■□□□□ 0.76
COL7A1-209ENST00000474432 C8orf48Q96LL4 319 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 CEP295NLQ96MC4 621 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 B3GNT5Q9BYG0 378 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 ZNF518BQ9C0D4 1074 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 EBF3Q9H4W6 596 aa19.81■□□□□ 0.76
COL7A1-209ENST00000474432 THG1LQ9NWX6 298 aaKnown RBP19.81■□□□□ 0.76
COL7A1-209ENST00000474432 F8VP50 259 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 CLDN5O00501 218 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 ARSAP15289 507 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 HOXC13P31276 330 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 GRIK1P39086 918 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 RAP1GAPP47736 663 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 AP3M2P53677 418 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 RUNX3Q13761 415 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 NCOA4Q13772 614 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 ZNF77Q15935 545 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 PAQR9Q6ZVX9 377 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 ARL14EPQ8N8R7 260 aaPredicted RBP19.8■□□□□ 0.76
COL7A1-209ENST00000474432 TMC2Q8TDI7 906 aa19.8■□□□□ 0.76
COL7A1-209ENST00000474432 A8MXQ7 604 aa19.79■□□□□ 0.76
COL7A1-209ENST00000474432 KINO60870 393 aaKnown RBP19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms