RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 KRT85P78386 507 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 NOGQ13253 232 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 KRTAP5-1Q6L8H4 278 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 C9orf47Q6ZRZ4 202 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 MRPL10Q7Z7H8 261 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 SMRP1Q8NCR6 262 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 ATL2Q8NHH9 583 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 NSMCE1Q8WV22 266 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 PTDSS2Q9BVG9 487 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 GNL3LQ9NVN8 582 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 SLC5A4Q9NY91 659 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 TLDC2A0PJX2 215 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 XPOTO43592 962 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 HTR6P50406 440 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 HK3P52790 923 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 LOXL3P58215 753 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 ARHGAP40Q5TG30 622 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 SFRP4Q6FHJ7 346 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 ZNF813Q6ZN06 617 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 DDX42Q86XP3 938 aaKnown RBP eCLIP4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 C3orf20Q8ND61 904 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 SOCS4Q8WXH5 440 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 TNPO1Q92973 898 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 SIK2Q9H0K1 926 aa4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 NDRG4Q9ULP0 352 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-212ENST00000474059 EXOC3O60645 756 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 USP1O94782 785 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 ABLIM3O94929 683 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 CHRM5P08912 532 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 SMARCA1P28370 1054 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 CNGA1P29973 690 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 PLCD1P51178 756 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 PDE1AP54750 535 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 ADKP55263 362 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 UAP1L1Q3KQV9 507 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 RGS7BPQ6MZT1 257 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 GIMAP6Q6P9H5 292 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 HEATR3Q7Z4Q2 680 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 ACRBPQ8NEB7 543 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 PNISRQ8TF01 805 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 FAM118BQ9BPY3 351 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 EFHD1Q9BUP0 239 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 GLOD4Q9HC38 313 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 ABCF2Q9UG63 623 aa4.36□□□□□ -1.71
CCDC88A-212ENST00000474059 CD8B2A6NJW9 211 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 GABRDO14764 452 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 SMAD6O43541 496 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 MYBL2P10244 700 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 ALDH5A1P51649 535 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 GPSM2P81274 684 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 PSG6Q00889 435 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 EXOSC9Q06265 439 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 ERV3-1Q14264 604 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 ZIK1Q3SY52 487 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 LONRF3Q496Y0 759 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 SYDE2Q5VT97 1194 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 BCDIN3DQ7Z5W3 292 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 NECAB2Q7Z6G3 386 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 KRT78Q8N1N4 520 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 CELF5Q8N6W0 485 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 CIPCQ9C0C6 399 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 CCDC8Q9H0W5 538 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 SLKQ9H2G2 1235 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 WDCPQ9H6R7 721 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 TRHDEQ9UKU6 1024 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 SHROOM4Q9ULL8 1493 aa4.35□□□□□ -1.71
CCDC88A-212ENST00000474059 hCG_1984214I3L0E3 225 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 OAZ2O95190 189 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 VNN1O95497 513 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 ATXN1LP0C7T5 689 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 TYRP14679 529 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 HDCP19113 662 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 PXNP49023 591 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 TPTEP56180 551 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 SEC23BQ15437 767 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 SDE2Q6IQ49 451 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 DPY19L3Q6ZPD9 716 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 SLC15A3Q8IY34 581 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 ABHD11Q8NFV4 315 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 XAGE5Q8WWM1 108 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 DDX17Q92841 729 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 CXorf36Q9H7Y0 433 aa4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 MRPS17Q9Y2R5 130 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-212ENST00000474059 A1BGP04217 495 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 RPLP2P05387 115 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 MAP2K6P52564 334 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 MTMR1Q13613 665 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 GTF2H3Q13889 308 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 FAM187BQ17R55 369 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 LY6KQ17RY6 165 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 AWAT1Q58HT5 328 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 L1TD1Q5T7N2 865 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 EMC10Q5UCC4 262 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 PELI3Q8N2H9 469 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 PRR18Q8N4B5 295 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 ZNF548Q8NEK5 533 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 FOXP1Q9H334 677 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 WWOXQ9NZC7 414 aa4.33□□□□□ -1.72
CCDC88A-212ENST00000474059 POLHQ9Y253 713 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms