RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TOP6BL	Q8N6T0	577 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	CD101	Q93033	1021 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	FUBP3	Q96I24	572 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	MTMR12	Q9C0I1	747 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	CRTAC1	Q9NQ79	661 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	VPS45	Q9NRW7	570 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	RBAK	Q9NYW8	714 aa	Predicted RBP	11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	TBC1D7	Q9P0N9	293 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	UXT	Q9UBK9	157 aa	Predicted RBP	11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	ITGA11	Q9UKX5	1188 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	ARHGAP26	Q9UNA1	814 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	SRPRB	Q9Y5M8	271 aa	Known RBP	11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	ITPR1	Q14643	2758 aa		11.98	□□□□□ -0.49
PTPN7-204	ENST00000462815	BCLAF3	A2AJT9	711 aa	Known RBP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815		K7EQS6	105 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	ATP2C2	O75185	946 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	KCNK5	O95279	499 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	OLFM2	O95897	454 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	HNRNPL	P14866	589 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	GAP43	P17677	238 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	LMO2	P25791	158 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	HOXD13	P35453	343 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	USP46	P62068	366 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	MYL7	Q01449	175 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	MESP2	Q0VG99	397 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	REST	Q13127	1097 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	CUL4A	Q13619	759 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	IL31	Q6EBC2	164 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	ADGRF2	Q8IZF7	708 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	CPA6	Q8N4T0	437 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	ARL14EP	Q8N8R7	260 aa	Predicted RBP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	C12orf50	Q8NA57	414 aa	Predicted RBP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	GLIS3	Q8NEA6	775 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	OR5B17	Q8NGF7	314 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	SH3RF2	Q8TEC5	729 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	ATP2A3	Q93084	1043 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	CLIC6	Q96NY7	704 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	ACCS	Q96QU6	501 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	TTLL2	Q9BWV7	592 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	LINC00597	Q9H2U6	94 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	MRPL44	Q9H9J2	332 aa	Known RBP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	PDE11A	Q9HCR9	933 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	TMEM30A	Q9NV96	361 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	DUS2	Q9NX74	493 aa	Known RBP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	ANGPTL2	Q9UKU9	493 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	SMC3	Q9UQE7	1217 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	SNX9	Q9Y5X1	595 aa		11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	TNRC6B	Q9UPQ9	1833 aa	Known RBP	11.97	□□□□□ -0.49
PTPN7-204	ENST00000462815	LAMA5	O15230	3695 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	TRAV19	A0A0A6YYK7	116 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	LNP1	A1A4G5	178 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	GOLGA8IP	A6NC78	632 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	GOLGA8J	A6NMD2	632 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	HUS1	O60921	280 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	GCNT3	O95395	438 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	APBB3	O95704	486 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	USP17L7	P0C7H9	530 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	LHX1	P48742	406 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	AMPD2	Q01433	879 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	PMS2CL	Q68D20	193 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	CC2D1A	Q6P1N0	951 aa	Predicted RBP	11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	SFTPA1	Q8IWL2	248 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	CSGALNACT2	Q8N6G5	542 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	RASSF8	Q8NHQ8	419 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	USP33	Q8TEY7	942 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	MYLPF	Q96A32	169 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	SPATA17	Q96L03	361 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	GZF1	Q9H116	711 aa	Predicted RBP	11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	TRPC7	Q9HCX4	862 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	INTS13	Q9NVM9	706 aa		11.96	□□□□□ -0.49
PTPN7-204	ENST00000462815	DSP	P15924	2871 aa	Known RBP	11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	LDHA	P00338	332 aa	Known RBP	11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	CKM	P06732	381 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	BCKDHB	P21953	392 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	CACNA2D1	P54289	1103 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	PSMC1	P62191	440 aa	Known RBP	11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	RBP5	P82980	135 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	FAM173B	Q6P4H8	233 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	DPH6	Q7L8W6	267 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	SPATA2L	Q8IUW3	424 aa	Predicted RBP	11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	OLIG1	Q8TAK6	271 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	CACTIN	Q8WUQ7	758 aa	Known RBP	11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	ACD	Q96AP0	544 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	CEP295NL	Q96MC4	621 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	SYT15	Q9BQS2	421 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	EDEM2	Q9BV94	578 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	RNF38	Q9H0F5	515 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	PCIF1	Q9H4Z3	704 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	EXOC7	Q9UPT5	735 aa		11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.95	□□□□□ -0.5
PTPN7-204	ENST00000462815	ZNF840P	A6NDX5	716 aa		11.94	□□□□□ -0.5
PTPN7-204	ENST00000462815	LEFTY2	O00292	366 aa		11.94	□□□□□ -0.5
PTPN7-204	ENST00000462815	CDX4	O14627	284 aa	Predicted RBP	11.94	□□□□□ -0.5
PTPN7-204	ENST00000462815	GIPC1	O14908	333 aa		11.94	□□□□□ -0.5
PTPN7-204	ENST00000462815	PRPF6	O94906	941 aa	Known RBP	11.94	□□□□□ -0.5
PTPN7-204	ENST00000462815	CYP17A1	P05093	508 aa		11.94	□□□□□ -0.5
PTPN7-204	ENST00000462815	PFKL	P17858	780 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms