RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NPTXRO95502 500 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 TGFB3P10600 412 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 RFC1P35251 1148 aaPredicted RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 PTK7Q13308 1070 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 SKIV2LQ15477 1246 aaKnown RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 TREML2Q5T2D2 321 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 RFX8Q6ZV50 586 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 VCPIP1Q96JH7 1222 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 UBN1Q9NPG3 1134 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 FOXO6A8MYZ6 492 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 BTBD19C9JJ37 291 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 IGF2BP3O00425 579 aaKnown RBP eCLIP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 TXNDC9O14530 226 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 HAUS5O94927 633 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 CST3P01034 146 aaPredicted RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 ZNF286BP0CG31 522 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 GARSP41250 739 aaKnown RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 QPCTQ16769 361 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 DCAF12L1Q5VU92 463 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 RWDD4Q6NW29 188 aaKnown RBP12.17□□□□□ -0.46
NPHP4-204ENST00000460696 TRIM42Q8IWZ5 723 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 RXFP2Q8WXD0 754 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 LRRC19Q9H756 370 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 DPP3Q9NY33 737 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 SDK1Q7Z5N4 2213 aa12.17□□□□□ -0.46
NPHP4-204ENST00000460696 CFAP73A6NFT4 308 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 GAS2O43903 313 aaKnown RBP12.16□□□□□ -0.46
NPHP4-204ENST00000460696 VCPP55072 806 aaKnown RBP12.16□□□□□ -0.46
NPHP4-204ENST00000460696 ZNF200P98182 395 aaPredicted RBP12.16□□□□□ -0.46
NPHP4-204ENST00000460696 MCL1Q07820 350 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 PID1Q7Z2X4 250 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 NUDCD3Q8IVD9 361 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 NOP53Q9NZM5 478 aaKnown RBP12.16□□□□□ -0.46
NPHP4-204ENST00000460696 USP18Q9UMW8 372 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 INPP5FQ9Y2H2 1132 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 STXBP5LQ9Y2K9 1186 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 ALDH1A1P00352 501 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 TAF11Q15544 211 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 DENND1BQ6P3S1 775 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 CRLF3Q8IUI8 442 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 CRYGNQ8WXF5 182 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 ZBTB10Q96DT7 871 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 ZNF518BQ9C0D4 1074 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 PPP2R3BQ9Y5P8 575 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 USH1CQ9Y6N9 552 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 CCDC78A2IDD5 438 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 ACKR2O00590 384 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 B4GALT5O43286 388 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 LSM8O95777 96 aaKnown RBP12.16□□□□□ -0.46
NPHP4-204ENST00000460696 VEGFBP49765 207 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 GEMIN4P57678 1058 aaKnown RBP12.16□□□□□ -0.46
NPHP4-204ENST00000460696 PTK6Q13882 451 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 HSDL1Q3SXM5 330 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 EEF1DP3Q658K8 133 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 PLEKHH3Q7Z736 793 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 TMEM176AQ96HP8 235 aa12.16□□□□□ -0.46
NPHP4-204ENST00000460696 DNALI1O14645 258 aaPredicted RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 NCF2P19878 526 aaPredicted RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 LAMC2Q13753 1193 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ERMARDQ5T6L9 678 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ATG16L1Q676U5 607 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ST6GALNAC4Q9H4F1 302 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 E2F8A0AVK6 867 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 CCDC160A6NGH7 325 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 SHOX2O60902 331 aaPredicted RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 NUDT17P0C025 328 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 FLT3LGP49771 235 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 SPRYD7Q5W111 196 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 BZW1Q7L1Q6 419 aaKnown RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 EXOC3L1Q86VI1 746 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 KATNAL2Q8IYT4 538 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 SH3TC2Q8TF17 1288 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ART4Q93070 314 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 MYCBPQ99417 103 aaPredicted RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 NACA2Q9H009 215 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 SIK2Q9H0K1 926 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ARHGAP28Q9P2N2 729 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 PHTF1Q9UMS5 762 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ADGRA3Q8IWK6 1321 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 LACTBL1A8MY62 500 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 MORF4L2Q15014 288 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 PKN2Q16513 984 aaKnown RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 TAF12Q16514 161 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 MAP7D1Q3KQU3 841 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ANKRD20A8PQ5CZ79 823 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 MDH1BQ5I0G3 518 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 CDKL3Q8IVW4 592 aaPredicted RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 ZC3H3Q8IXZ2 948 aaKnown RBP12.15□□□□□ -0.46
NPHP4-204ENST00000460696 TTC39CQ8N584 583 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 C3orf20Q8ND61 904 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 HIPK4Q8NE63 616 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 REPS2Q8NFH8 660 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 BORCS6Q96GS4 357 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 SGIP1Q9BQI5 828 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 TSSK1BQ9BXA7 367 aa12.15□□□□□ -0.46
NPHP4-204ENST00000460696 LRP5O75197 1615 aa12.15□□□□□ -0.47
NPHP4-204ENST00000460696 A0A0B4J269 797 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 CXCL11O14625 94 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 UPP2O95045 317 aa12.14□□□□□ -0.47
NPHP4-204ENST00000460696 CYP2C9P11712 490 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms