RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 RAPGEF4Q8WZA2 1011 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 STRBPQ96SI9 672 aaKnown RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 NAA15Q9BXJ9 866 aaKnown RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 UNKQ9C0B0 810 aaKnown RBP4.88□□□□□ -1.63
USP40-209ENST00000452724 PRDM13Q9H4Q3 707 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 PNPLA8Q9NP80 782 aa4.88□□□□□ -1.63
USP40-209ENST00000452724 CCDC151A5D8V7 595 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 F8W8V4 182 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 KPNA5O15131 536 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 IGLV2-14P01704 120 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 PPP3CBP16298 524 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 ZNF37AP17032 561 aaPredicted RBP4.87□□□□□ -1.63
USP40-209ENST00000452724 PTH2RP49190 550 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 PRIM2P49643 509 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 NEK3P51956 506 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 KRT17Q04695 432 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 MGAT5BQ3V5L5 792 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 PLA1AQ53H76 456 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 VPS53Q5VIR6 699 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 SFRP4Q6FHJ7 346 aaPredicted RBP4.87□□□□□ -1.63
USP40-209ENST00000452724 GRASPQ7Z6J2 395 aaPredicted RBP4.87□□□□□ -1.63
USP40-209ENST00000452724 ARHGEF25Q86VW2 580 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.87□□□□□ -1.63
USP40-209ENST00000452724 B3GALNT2Q8NCR0 500 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 LPIN2Q92539 896 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 SPSB4Q96A44 273 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 TBCBQ99426 244 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 NELL2Q99435 816 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 PTDSS2Q9BVG9 487 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 STK31Q9BXU1 1019 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 TPSD1Q9BZJ3 242 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 SALL3Q9BXA9 1300 aa4.87□□□□□ -1.63
USP40-209ENST00000452724 PROM1O43490 865 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 RASSF9O75901 435 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 IL18RAPO95256 599 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 PPIFP30405 207 aaKnown RBP4.86□□□□□ -1.63
USP40-209ENST00000452724 LRPAP1P30533 357 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 FOLR3P41439 243 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 CASP5P51878 434 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 HNRNPMP52272 730 aaKnown RBP eCLIP4.86□□□□□ -1.63
USP40-209ENST00000452724 ITIH3Q06033 890 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 ZNF543Q08ER8 600 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 DAG1Q14118 895 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 LONRF1Q17RB8 773 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 AKNAD1Q5T1N1 836 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 ARHGAP40Q5TG30 622 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 ICE2Q659A1 982 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 VWA1Q6PCB0 445 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 ZNF280BQ86YH2 543 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 FAM109AQ8N4B1 249 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 FAM98AQ8NCA5 519 aaKnown RBP4.86□□□□□ -1.63
USP40-209ENST00000452724 TOR1AIP2Q8NFQ8 470 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 MYCBPAPQ8TBZ2 947 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 PARD3BQ8TEW8 1205 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 FAM136AQ96C01 138 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 PDLIM2Q96JY6 352 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 BRIP1Q9BX63 1249 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 ACTRT3Q9BYD9 372 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 AMBRA1Q9C0C7 1298 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 SEMA4GQ9NTN9 838 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 ZSCAN32Q9NX65 697 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 FOXJ2Q9P0K8 574 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 PHTF1Q9UMS5 762 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 PCSK5Q92824 1860 aa4.86□□□□□ -1.63
USP40-209ENST00000452724 POM121BA6NF01 834 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 hCG_1984214I3L0E3 225 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 YY2O15391 372 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 PROP1O75360 226 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 PARP1P09874 1014 aaKnown RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 IL1R1P14778 569 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 AK2P54819 239 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 MYO1EQ12965 1108 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 HDAC1Q13547 482 aaPredicted RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 NBPF8Q3BBV2 869 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 ZIK1Q3SY52 487 aaPredicted RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 COLEC12Q5KU26 742 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 RGS7BPQ6MZT1 257 aaPredicted RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 ZDHHC24Q6UX98 284 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 TSHZ1Q6ZSZ6 1077 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 UNC13DQ70J99 1090 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 LIX1LQ8IVB5 337 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 SVIPQ8NHG7 77 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 ZNF384Q8TF68 577 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 FBXL20Q96IG2 436 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 SNX22Q96L94 193 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 PPP1R9BQ96SB3 815 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 CHST8Q9H2A9 424 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 ALG13Q9NP73 1137 aaKnown RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 XPNPEP3Q9NQH7 507 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 CHST12Q9NRB3 414 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 SERTAD3Q9UJW9 196 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 ITGB1BP2Q9UKP3 347 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 HDAC9Q9UKV0 1011 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 NDRG4Q9ULP0 352 aaKnown RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 TBC1D30Q9Y2I9 924 aa4.85□□□□□ -1.63
USP40-209ENST00000452724 MRPS17Q9Y2R5 130 aaKnown RBP4.85□□□□□ -1.63
USP40-209ENST00000452724 LOC102723971A0A1B0GUV8 181 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 MPPED1O15442 326 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 MT-ND5P03915 603 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 TXNP10599 105 aaKnown RBP4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms