RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TUBB8Q3ZCM7 444 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 CD300EQ496F6 205 aaPredicted RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 PRR16Q569H4 304 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 TAF2Q6P1X5 1199 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 FBXO42Q6P3S6 717 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 PPP1R32Q7Z5V6 425 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 DPP9Q86TI2 863 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 ARHGEF25Q86VW2 580 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 CERS3Q8IU89 383 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 BOLLQ8N9W6 283 aaKnown RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 Q8NA96 180 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 ATP11CQ8NB49 1132 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 ACRBPQ8NEB7 543 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 TOR1AIP2Q8NFQ8 470 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 POF1BQ8WVV4 589 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 FBXL20Q96IG2 436 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 SNX22Q96L94 193 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 SLC46A1Q96NT5 459 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 TRIB1Q96RU8 372 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 SMOQ99835 787 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 MS4A7Q9GZW8 240 aaPredicted RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 CTTNBP2NLQ9P2B4 639 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 ITGB1BP2Q9UKP3 347 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 PRAMEF33A0A0G2JMD5 474 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 CCDC195A0A1B0GUA6 201 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 hCG_1984214I3L0E3 225 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 MASP2O00187 686 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 PRAMEF10O60809 474 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 RASSF9O75901 435 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 SUN1O94901 812 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 THP07101 528 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 RPL17P18621 184 aaKnown RBP4.25□□□□□ -1.73
VPS41-207ENST00000439468 ZNF134P52741 427 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 MAPK10P53779 464 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 RPS7P62081 194 aaKnown RBP4.25□□□□□ -1.73
VPS41-207ENST00000439468 STK3Q13188 491 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 TRIM14Q14142 442 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 ZNF169Q14929 603 aaPredicted RBP4.25□□□□□ -1.73
VPS41-207ENST00000439468 ARL13BQ3SXY8 428 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 ZIK1Q3SY52 487 aaPredicted RBP4.25□□□□□ -1.73
VPS41-207ENST00000439468 AMOTQ4VCS5 1084 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 FAM83BQ5T0W9 1011 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 AKNAD1Q5T1N1 836 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 IZUMO3Q5VZ72 239 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 FAM160B1Q5W0V3 765 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 TAPT1Q6NXT6 567 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 GGT6Q6P531 493 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 KCTD20Q7Z5Y7 419 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 PSD4Q8NDX1 1056 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 DEPTORQ8TB45 409 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 SNX19Q92543 992 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 NELL1Q92832 810 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 C18orf8Q96DM3 657 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 LRRC46Q96FV0 321 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 MSLNLQ96KJ4 702 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 BBC3Q96PG8 261 aaPredicted RBP4.25□□□□□ -1.73
VPS41-207ENST00000439468 CRB3Q9BUF7 120 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 CNPPD1Q9BV87 410 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 SPATA5L1Q9BVQ7 753 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 BRIP1Q9BX63 1249 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 ZNF518BQ9C0D4 1074 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 R3HDMLQ9H3Y0 253 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 PPCSQ9HAB8 311 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 STARD7Q9NQZ5 370 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 INTS13Q9NVM9 706 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 HESX1Q9UBX0 185 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 MID2Q9UJV3 735 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 MRPS17Q9Y2R5 130 aaKnown RBP4.25□□□□□ -1.73
VPS41-207ENST00000439468 NEU2Q9Y3R4 380 aa4.25□□□□□ -1.73
VPS41-207ENST00000439468 A0A1W2PS29 197 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 H7C4K7 107 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 MYO1CO00159 1063 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 YY2O15391 372 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 FGF18O76093 207 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 FGFR2P21802 821 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 CD38P28907 300 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 PPM1AP35813 382 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 CARSP49589 748 aaKnown RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 ITGA8P53708 1063 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 LILRA4P59901 499 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 SIM1P81133 766 aaPredicted RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 RAB32Q13637 225 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 SP5Q6BEB4 398 aaPredicted RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 PRIMA1Q86XR5 153 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 TXLNBQ8N3L3 684 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 LNX2Q8N448 690 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 B3GALNT2Q8NCR0 500 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 SLC30A5Q8TAD4 765 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 POC1BQ8TC44 478 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 FUBP1Q96AE4 644 aaKnown RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 ZNF764Q96H86 408 aaPredicted RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 WDR12Q9GZL7 423 aaKnown RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 A1CFQ9NQ94 594 aaKnown RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 TRMT13Q9NUP7 481 aaKnown RBP4.24□□□□□ -1.73
VPS41-207ENST00000439468 HDAC9Q9UKV0 1011 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 MAN2B2Q9Y2E5 1009 aa4.24□□□□□ -1.73
VPS41-207ENST00000439468 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.23□□□□□ -1.73
VPS41-207ENST00000439468 A0A1W2PPC4 97 aa4.23□□□□□ -1.73
VPS41-207ENST00000439468 RAB27BO00194 218 aa4.23□□□□□ -1.73
VPS41-207ENST00000439468 MGST3O14880 152 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms