RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 CATSPER4Q7RTX7 472 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 CXorf38Q8TB03 319 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 MS4A4AQ96JQ5 239 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 ZMAT2Q96NC0 199 aaKnown RBP12.15□□□□□ -0.46
UBR4-207ENST00000425413 MIS12Q9H081 205 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 TUBGCP4Q9UGJ1 667 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 TSPAN16Q9UKR8 245 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.15□□□□□ -0.46
UBR4-207ENST00000425413 NAALADL1Q9UQQ1 740 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 LOC285556D6RIA3 1793 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 GOLGA6L7A0A1B0GV03 622 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 SPAG7O75391 227 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 RNF8O76064 485 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 BRAFP15056 766 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 PDGFRAP16234 1089 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 TNFAIP2Q03169 654 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 CNGA2Q16280 664 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 GPR162Q16538 588 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 ANKRD22Q5VYY1 191 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 CCDC121Q6ZUS5 278 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 MICALCLQ6ZW33 695 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 TAOK1Q7L7X3 1001 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 FAM71DQ8N9W8 422 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 SHCBP1Q8NEM2 672 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 ZC3H15Q8WU90 426 aaKnown RBP12.15□□□□□ -0.46
UBR4-207ENST00000425413 MRPL45Q9BRJ2 306 aaKnown RBP12.15□□□□□ -0.46
UBR4-207ENST00000425413 STMN4Q9H169 189 aaPredicted RBP12.15□□□□□ -0.46
UBR4-207ENST00000425413 VTA1Q9NP79 307 aa12.15□□□□□ -0.46
UBR4-207ENST00000425413 NGRNQ9NPE2 291 aaKnown RBP12.15□□□□□ -0.46
UBR4-207ENST00000425413 C3orf70A6NLC5 250 aaPredicted RBP12.15□□□□□ -0.47
UBR4-207ENST00000425413 DNALI1O14645 258 aaPredicted RBP12.15□□□□□ -0.47
UBR4-207ENST00000425413 PDGFRBP09619 1106 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 KDELR1P24390 212 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 GPD2P43304 727 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 MYO1EQ12965 1108 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 PDIA2Q13087 525 aaKnown RBP12.15□□□□□ -0.47
UBR4-207ENST00000425413 GOLGA7BQ2TAP0 167 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 TRNP1Q6NT89 227 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 SCUBE3Q8IX30 993 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 NPLOC4Q8TAT6 608 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 CFAP57Q96MR6 1250 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 B3GNT5Q9BYG0 378 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 KIF9Q9HAQ2 790 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.15□□□□□ -0.47
UBR4-207ENST00000425413 DDX56Q9NY93 547 aaKnown RBP12.15□□□□□ -0.47
UBR4-207ENST00000425413 CPA4Q9UI42 421 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 TPX2Q9ULW0 747 aaKnown RBP12.15□□□□□ -0.47
UBR4-207ENST00000425413 USP18Q9UMW8 372 aa12.15□□□□□ -0.47
UBR4-207ENST00000425413 SIP14410 1827 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 EXOC1LA0A1B0GW35 172 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 PAEPP09466 180 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 P4HA1P13674 534 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 YARSP54577 528 aaKnown RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 CDH6P55285 790 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 RBP5P82980 135 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 ZNF200P98182 395 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 CAV1Q03135 178 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 TAP1Q03518 808 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 ACVR2BQ13705 512 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 OASLQ15646 514 aaKnown RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 LRRC38Q5VT99 294 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 C1orf228Q6PIY5 440 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 VSTM1Q6UX27 236 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 FAM183BPQ6ZVS7 135 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 UNC45BQ8IWX7 931 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 RXFP2Q8WXD0 754 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 RSAD2Q8WXG1 361 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 MAML3Q96JK9 1138 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 PEBP4Q96S96 227 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 LHX5Q9H2C1 402 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 NXF3Q9H4D5 531 aaKnown RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 ASB7Q9H672 318 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 MMP3P08254 477 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 CTCFP49711 727 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 LMNB2Q03252 620 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 PPP1R26Q5T8A7 1209 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 ZCCHC9Q8N567 271 aaKnown RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 LINC01465Q8N7H1 131 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 THOC1Q96FV9 657 aaKnown RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 SERPINB12Q96P63 405 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 ZNF317Q96PQ6 595 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 TMEM109Q9BVC6 243 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 ROPN1BQ9BZX4 212 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 TRIM6Q9C030 488 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 KATNBL1Q9H079 304 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 ROPN1Q9HAT0 212 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 BARX2Q9UMQ3 279 aaPredicted RBP12.14□□□□□ -0.47
UBR4-207ENST00000425413 MGAMO43451 1857 aa12.14□□□□□ -0.47
UBR4-207ENST00000425413 A0A1B0GUA9 196 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 TCRBV7S3A2A0A539 114 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 TCP11X1B4DZS4 312 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 KRT7P08729 469 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 GCLCP48506 637 aaPredicted RBP12.13□□□□□ -0.47
UBR4-207ENST00000425413 BASP1P80723 227 aaKnown RBP12.13□□□□□ -0.47
UBR4-207ENST00000425413 BBOF1Q8ND07 529 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 OR6B3Q8NGW1 331 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 L3MBTL3Q96JM7 780 aaPredicted RBP12.13□□□□□ -0.47
UBR4-207ENST00000425413 TINF2Q9BSI4 451 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 NT5C1AQ9BXI3 368 aa12.13□□□□□ -0.47
UBR4-207ENST00000425413 DPEP3Q9H4B8 488 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms