RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 GOLGA7BQ2TAP0 167 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MYO1HQ8N1T3 1032 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 THOC1Q96FV9 657 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF333Q96JL9 665 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MCEEQ96PE7 176 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 E9PBE3 544 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 EXTL3O43909 919 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 ACSL4O60488 711 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PDHA1P08559 390 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 MYBL2P10244 700 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PABPC1P11940 636 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 IFNGR2P38484 337 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PDIA5Q14554 519 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CCDC92Q53HC0 331 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 REPS1Q96D71 796 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 FRMD8P1Q9BZ68 369 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 BCL2L14Q9BZR8 327 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 TLR8Q9NR97 1041 aaKnown RBP7.12□□□□□ -1.27
SCN1A-204ENST00000423058 PDGFCQ9NRA1 345 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 GRID1Q9ULK0 1009 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 RAD54BQ9Y620 910 aa7.12□□□□□ -1.27
SCN1A-204ENST00000423058 CEP152O94986 1710 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PDXKO00764 312 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MTRF1O75570 445 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ITGAXP20702 1163 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PRCPP42785 496 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MCAMP43121 646 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 QRICH1Q2TAL8 776 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 FAM182BQ5T319 152 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CES5AQ6NT32 575 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PEG10Q86TG7 708 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF589Q86UQ0 364 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 SLC25A41Q8N5S1 370 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 STRBPQ96SI9 672 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 OSGEPL1Q9H4B0 414 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 APEX2Q9UBZ4 518 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 LZTS1Q9Y250 596 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 A0A087X0T9 212 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 H0Y3Z8 333 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 AMHP03971 560 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PCNAP12004 261 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ENO3P13929 434 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 GPD1P21695 349 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CCNG1P51959 295 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ELAVL2Q12926 359 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 DAB2IPQ5VWQ8 1189 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 GUF1Q8N442 669 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 GJD4Q96KN9 370 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 UBE2OQ9C0C9 1292 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 SLITRK2Q9H156 845 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 VTI1BQ9UEU0 232 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ARL2BPQ9Y2Y0 163 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MYO9BQ13459 2157 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 KANSL1LA0AUZ9 987 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 NFIBO00712 420 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 SERPINB1P30740 379 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 HALP42357 657 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 HSPA13P48723 471 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM62Q0P6H9 643 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 STX4Q12846 297 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CNGA2Q16280 664 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 SLC25A24Q6NUK1 477 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF248Q8NDW4 579 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF668Q96K58 619 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 OSBPL3Q9H4L5 887 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 UXTQ9UBK9 157 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CRYL1Q9Y2S2 319 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 RFX7Q2KHR2 1363 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MSH3P20585 1137 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 SERPINB3P29508 390 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MAGEA10P43363 369 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MAPK9P45984 424 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CENPLQ8N0S6 344 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CARNMT1Q8N4J0 409 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 RDM1Q8NG50 284 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 OSBP2Q969R2 916 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PIGUQ9H490 435 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 KLHL31Q9H511 634 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 HPS4Q9NQG7 708 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 KLHL3Q9UH77 587 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ANAPC2Q9UJX6 822 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 PRAMEF22A3QJZ6 481 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM191CA6NGB0 347 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 MTA2O94776 668 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ENO1P06733 434 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 POLR2LP62875 67 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 EMC2Q15006 297 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 ESRP1Q6NXG1 681 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 AGMOQ6ZNB7 445 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CRAMP1Q96RY5 1269 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 C17orf75Q9HAS0 396 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 EXOSC4Q9NPD3 245 aaKnown RBP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.11□□□□□ -1.27
SCN1A-204ENST00000423058 GNG14A0A1W2PPG7 69 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 OPLAHO14841 1288 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 KRT33AO76009 404 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 KRT75O95678 551 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 LHX1P48742 406 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CENPCQ03188 943 aa7.11□□□□□ -1.27
SCN1A-204ENST00000423058 CYLC2Q14093 348 aaPredicted RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms