RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CRABP2P29373 138 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PIK3CAP42336 1068 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 YWHAEP62258 255 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 FASTKD3Q14CZ7 662 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 RBBP5Q15291 538 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TRIP13Q15645 432 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ANGEL2Q5VTE6 544 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 CYP4F22Q6NT55 531 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 LRRC74BQ6ZQY2 392 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 MTDHQ86UE4 582 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 VSIG10LQ86VR7 867 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 WDR49Q8IV35 697 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 ALDH16A1Q8IZ83 802 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TCP10LQ8TDR4 215 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PYROXD1Q8WU10 500 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 NGLY1Q96IV0 654 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 GJD4Q96KN9 370 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PRMT6Q96LA8 375 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 C11orf70Q9BRQ4 267 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 NIFKQ9BYG3 293 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 EPB41L1Q9H4G0 881 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM96AQ9H5X1 160 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 TDRD3Q9H7E2 651 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 APOBEC3GQ9HC16 384 aaKnown RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 XPNPEP1Q9NQW7 623 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 SIRPGQ9P1W8 387 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 SCOCQ9UIL1 159 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 PLA2G4CQ9UP65 541 aa6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.01□□□□□ -1.45
CCDC88A-203ENST00000412148 POC1B-GALNT4F8VUJ3 575 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 APOC4-APOC2K7ER74 178 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 DPYSL4O14531 572 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 AP1G1O43747 822 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 FKBP6O75344 327 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 SPAG7O75391 227 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 SNUPNO95149 360 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 CBX6O95503 412 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 APOC2P02655 101 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 KCNA2P16389 499 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TAL1P17542 331 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 CD58P19256 250 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PRKCHP24723 683 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ADRA1DP25100 572 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 CNTFP26441 200 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 CCND2P30279 289 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PCK1P35558 622 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ARL2P36404 184 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 GABRB2P47870 512 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PAPOLAP51003 745 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 ARFIP2P53365 341 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 CACNB3P54284 484 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 KHDC1Q4VXA5 237 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 ACSBG2Q5FVE4 666 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 SNX30Q5VWJ9 437 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 NAIF1Q69YI7 327 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC30A10Q6XR72 485 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TIFABQ6ZNK6 161 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 SEPT14Q6ZU15 432 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ILDR2Q71H61 639 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ARCQ7LC44 396 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 MYLK4Q86YV6 388 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 PDIK1LQ8N165 341 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 GLIS1Q8NBF1 620 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PPFIBP2Q8ND30 876 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 DTNBP1Q96EV8 351 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 FNBP1Q96RU3 617 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TSC22D3Q99576 134 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 SYT15Q9BQS2 421 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 WDR83Q9BRX9 315 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 HEMGNQ9BXL5 484 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 VPS37BQ9H9H4 285 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 GPRC5CQ9NQ84 441 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ARHGEF4Q9NR80 690 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TAS2R1Q9NYW7 299 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 USP21Q9UK80 565 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 AGO2Q9UKV8 859 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 PCDHAC2Q9Y5I4 1007 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 NUMBLQ9Y6R0 609 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PDCD11Q14690 1871 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 CFAP69A5D8W1 941 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ENO4A6NNW6 628 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 FOXO6A8MYZ6 492 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 NFIBO00712 420 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 GYG2O15488 501 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 SNNO75324 88 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 TM7SF2O76062 418 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 MYL4P12829 197 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 AOC1P19801 751 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 POLR2BP30876 1174 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 NOP14P78316 857 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 PPARDQ03181 441 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 BTKQ06187 659 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 KCNJ11Q14654 390 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 MUM1Q2TAK8 710 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 XKR3Q5GH77 459 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TTC39BQ5VTQ0 682 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 DNAJC24Q6P3W2 148 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 CCDC62Q6P9F0 684 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF449Q6P9G9 518 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 BRSK2Q8IWQ3 736 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms