RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 FAM163BP0C2L3 166 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 POLR2BP30876 1174 aaKnown RBP9.84□□□□□ -0.83
VPS53-203ENST00000401468 OR1D2P34982 312 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 PBX1P40424 430 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 TAF6P49848 677 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 TPM4P67936 248 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 MYL7Q01449 175 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 TCF15Q12870 199 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 MTMR3Q13615 1198 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 NR1I3Q14994 352 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 UVSSAQ2YD98 709 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 HSP90AA4PQ58FG1 418 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 LCE2AQ5TA79 106 aaPredicted RBP9.84□□□□□ -0.83
VPS53-203ENST00000401468 TCERG1LQ5VWI1 586 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 GRASPQ7Z6J2 395 aaPredicted RBP9.84□□□□□ -0.83
VPS53-203ENST00000401468 PPFIBP1Q86W92 1011 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 TMEM105Q8N8V8 129 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 LNX1Q8TBB1 728 aaPredicted RBP9.84□□□□□ -0.83
VPS53-203ENST00000401468 SEMA4DQ92854 862 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 SUSD3Q96L08 255 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 ZNF560Q96MR9 790 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 NECTIN4Q96NY8 510 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 TTPALQ9BTX7 342 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 RPP25Q9BUL9 199 aaKnown RBP9.84□□□□□ -0.83
VPS53-203ENST00000401468 BCO2Q9BYV7 579 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 SLC24A3Q9HC58 644 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 CHST7Q9NS84 486 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 RAB20Q9NX57 234 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 CA14Q9ULX7 337 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 SORCS3Q9UPU3 1222 aa9.84□□□□□ -0.83
VPS53-203ENST00000401468 HELZP42694 1942 aaKnown RBP9.84□□□□□ -0.83
VPS53-203ENST00000401468 CLUHO75153 1309 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 SF3B1O75533 1304 aaKnown RBP eCLIP9.83□□□□□ -0.841e-10■■■■■ 107
VPS53-203ENST00000401468 ZFHX2Q9C0A1 2572 aaPredicted RBP9.83□□□□□ -0.84
VPS53-203ENST00000401468 COL4A2P08572 1712 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 A0A1W2PQC6 194 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 KPNA7A9QM74 516 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 CAPN5O15484 640 aaPredicted RBP9.83□□□□□ -0.84
VPS53-203ENST00000401468 B3GAT3O94766 335 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 VARSP26640 1264 aaKnown RBP9.83□□□□□ -0.84
VPS53-203ENST00000401468 AVPR2P30518 371 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 MYL6P60660 151 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 FANCCQ00597 558 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 KCNMA1Q12791 1236 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 MRPL58Q14197 206 aaKnown RBP9.83□□□□□ -0.84
VPS53-203ENST00000401468 SGSM1Q2NKQ1 1148 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 SV2CQ496J9 727 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 DPH6Q7L8W6 267 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 TOP6BLQ8N6T0 577 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 RNF214Q8ND24 703 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 ANKRD20A12PQ8NF67 263 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 ITFG1Q8TB96 612 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 SLC7A14Q8TBB6 771 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 TSC1Q92574 1164 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 HPDLQ96IR7 371 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 MFSD1Q9H3U5 465 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 KCNK12Q9HB15 430 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 RXFP1Q9HBX9 757 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 APOBEC3GQ9HC16 384 aaKnown RBP9.83□□□□□ -0.84
VPS53-203ENST00000401468 SIX2Q9NPC8 291 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 PLCB1Q9NQ66 1216 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 TAB2Q9NYJ8 693 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 FBXL5Q9UKA1 691 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 AGAP1Q9UPQ3 857 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 SIK3Q9Y2K2 1263 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 CDY1Q9Y6F8 540 aa9.83□□□□□ -0.84
VPS53-203ENST00000401468 SYN3O14994 580 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 TRAPPC3O43617 180 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 TBC1D4O60343 1298 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 LRRN2O75325 713 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 TACC1O75410 805 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 OAZ2O95190 189 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 C8AP07357 584 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 OR4Q2P0C623 313 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 TYMPP19971 482 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 CDK11BP21127 795 aaKnown RBP9.82□□□□□ -0.84
VPS53-203ENST00000401468 FGFR3P22607 806 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 PON1P27169 355 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 PIK3CAP42336 1068 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 ASPAP45381 313 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 NOP14P78316 857 aaKnown RBP9.82□□□□□ -0.84
VPS53-203ENST00000401468 GCNT1Q02742 428 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 CETN1Q12798 172 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 ELAVL2Q12926 359 aaKnown RBP9.82□□□□□ -0.84
VPS53-203ENST00000401468 MYO1EQ12965 1108 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 BIRC3Q13489 604 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 LILRA6Q6PI73 481 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 TRIM65Q6PJ69 517 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.82□□□□□ -0.84
VPS53-203ENST00000401468 GBP6Q6ZN66 633 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 ERMP1Q7Z2K6 904 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 SIX5Q8N196 739 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 UBR7Q8N806 425 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 JAKMIP2Q96AA8 810 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 SENP8Q96LD8 212 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 NAP1L5Q96NT1 182 aaPredicted RBP9.82□□□□□ -0.84
VPS53-203ENST00000401468 KXD1Q9BQD3 176 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 VPS16Q9H269 839 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 GCNT4Q9P109 453 aa9.82□□□□□ -0.84
VPS53-203ENST00000401468 MAP10Q9P2G4 905 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms