RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 OATP04181 439 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 CDH5P33151 784 aaPredicted RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 CCNHP51946 323 aaPredicted RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 TAP1Q03518 808 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 KLHL38Q2WGJ6 581 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 PTPN20Q4JDL3 420 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 ANO7Q6IWH7 933 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 DSTYKQ6XUX3 929 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 C4orf50Q6ZRC1 276 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 BBS12Q6ZW61 710 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 ZBTB33Q86T24 672 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 RSAD2Q8WXG1 361 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 PHACTR1Q9C0D0 580 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 CYTH4Q9UIA0 394 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 XPO7Q9UIA9 1087 aaKnown RBP13.32□□□□□ -0.28
SHMT1-205ENST00000395684 EFR3BQ9Y2G0 817 aa13.32□□□□□ -0.28
SHMT1-205ENST00000395684 ATG7O95352 703 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 EGFRP00533 1210 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 KDELR1P24390 212 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 ZNF772Q68DY9 489 aaPredicted RBP13.31□□□□□ -0.28
SHMT1-205ENST00000395684 CDCA2Q69YH5 1023 aaPredicted RBP13.31□□□□□ -0.28
SHMT1-205ENST00000395684 CIAPIN1Q6FI81 312 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 DENND1BQ6P3S1 775 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 BRSK2Q8IWQ3 736 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 FAM71DQ8N9W8 422 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 AGBL3Q8NEM8 1001 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 PTCD3Q96EY7 689 aaKnown RBP13.31□□□□□ -0.28
SHMT1-205ENST00000395684 SERAC1Q96JX3 654 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 ZNF302Q9NR11 478 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 ZNF214Q9UL59 606 aaPredicted RBP13.31□□□□□ -0.28
SHMT1-205ENST00000395684 FER1L6Q2WGJ9 1857 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 KRT3P12035 628 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 ETV4P43268 484 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 CAPSQ13938 189 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 TAF5Q15542 800 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 TAZQ16635 292 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 SCARA5Q6ZMJ2 495 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 EMC1Q8N766 993 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 SLC7A3Q8WY07 619 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 CDHR1Q96JP9 859 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 OSBPL1AQ9BXW6 950 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 NIF3L1Q9GZT8 377 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 MYOZ2Q9NPC6 264 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 FBXO6Q9NRD1 293 aaPredicted RBP13.31□□□□□ -0.28
SHMT1-205ENST00000395684 GINM1Q9NU53 330 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 PCDHGC3Q9UN70 934 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 RPL26L1Q9UNX3 145 aaKnown RBP13.31□□□□□ -0.28
SHMT1-205ENST00000395684 CHMP2BQ9UQN3 213 aa13.31□□□□□ -0.28
SHMT1-205ENST00000395684 SIGLEC16A6NMB1 481 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 CCDC22O60826 627 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 STAM2O75886 525 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 LINGO3P0C6S8 592 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 DHRS4L1P0CG22 281 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 ATP6V1C1P21283 382 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 SERPINB3P29508 390 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 FSTL1Q12841 308 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 EP400NLQ6ZTU2 488 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 SH2D5Q6ZV89 423 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 APBB1IPQ7Z5R6 666 aaPredicted RBP13.3□□□□□ -0.28
SHMT1-205ENST00000395684 WDR49Q8IV35 697 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 PDIK1LQ8N165 341 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 SH3TC2Q8TF17 1288 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 ALKBH8Q96BT7 664 aaKnown RBP13.3□□□□□ -0.28
SHMT1-205ENST00000395684 BTBD10Q9BSF8 475 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TSSK1BQ9BXA7 367 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TRIM55Q9BYV6 548 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 DCLRE1BQ9H816 532 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 ZFATQ9P243 1243 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 C2orf71A6NGG8 1288 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 GSC2O15499 205 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 LPXNO60711 386 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 MT-ND3P03897 115 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 PCK1P35558 622 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 ELK3P41970 407 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 ARFIP2P53365 341 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 HIRAP54198 1017 aaPredicted RBP13.3□□□□□ -0.28
SHMT1-205ENST00000395684 BASP1P80723 227 aaKnown RBP13.3□□□□□ -0.28
SHMT1-205ENST00000395684 CXCL9Q07325 125 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 DPYSL3Q14195 570 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TMEM132BQ14DG7 1078 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 SYCP2LQ5T4T6 812 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 RTKN2Q8IZC4 609 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TEX9Q8N6V9 391 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TTC13Q8NBP0 860 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TMEM134Q9H6X4 195 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 PCSK1NQ9UHG2 260 aa13.3□□□□□ -0.28
SHMT1-205ENST00000395684 TCRBV9S1A1TA0A576 114 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 ADCY3O60266 1144 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 HNRNPCL1O60812 293 aaKnown RBP13.29□□□□□ -0.28
SHMT1-205ENST00000395684 HAUS5O94927 633 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 KRT7P08729 469 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 DLDP09622 509 aaKnown RBP13.29□□□□□ -0.28
SHMT1-205ENST00000395684 GCKP35557 465 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 NEK3P51956 506 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 FAAP100Q0VG06 881 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 GRIK3Q13003 919 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 PRKD1Q15139 912 aaPredicted RBP13.29□□□□□ -0.28
SHMT1-205ENST00000395684 SGSM1Q2NKQ1 1148 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 KBTBD12Q3ZCT8 623 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms