RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TRAF3IP3Q9Y228 551 aa23.18■■□□□ 1.3
CCDC28B-201ENST00000373602 ZNF202O95125 648 aa23.17■■□□□ 1.3
CCDC28B-201ENST00000373602 SOX9P48436 509 aa23.17■■□□□ 1.3
CCDC28B-201ENST00000373602 CYP27A1Q02318 531 aa23.17■■□□□ 1.3
CCDC28B-201ENST00000373602 LMAN1LQ9HAT1 526 aa23.17■■□□□ 1.3
CCDC28B-201ENST00000373602 TDP1Q9NUW8 608 aa23.17■■□□□ 1.3
CCDC28B-201ENST00000373602 CCL26Q9Y258 94 aa23.17■■□□□ 1.3
CCDC28B-201ENST00000373602 SPECC1L-ADORA2AF8WAN1 911 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 CALUO43852 315 aaPredicted RBP23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 CHRNB1P11230 501 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 PTPN1P18031 435 aaKnown RBP23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 GRIK1P39086 918 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 CSTF1Q05048 431 aaKnown RBP23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 MTAPQ13126 283 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 NCOA4Q13772 614 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 ZNF268Q14587 947 aaPredicted RBP23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 KCNB1Q14721 858 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 MDH1BQ5I0G3 518 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 MAMSTRQ6ZN01 415 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 RALGPS2Q86X27 583 aaPredicted RBP23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 TMC2Q8TDI7 906 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 FAM83CQ9BQN1 747 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 IER2Q9BTL4 223 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 PRMT8Q9NR22 394 aaPredicted RBP23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 FANCMQ8IYD8 2048 aa23.16■■□□□ 1.3
CCDC28B-201ENST00000373602 KIF26AQ9ULI4 1882 aaPredicted RBP23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 VNN1O95497 513 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 CTHP32929 405 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 DLG4P78352 724 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 TNK2Q07912 1038 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 NFIL3Q16649 462 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 ZNF699Q32M78 642 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 ZNF667Q5HYK9 610 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 CEP135Q66GS9 1140 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 TTC8Q8TAM2 541 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 DPEP3Q9H4B8 488 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 GKN1Q9NS71 199 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 FRMD4BQ9Y2L6 1034 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 PTPRDP23468 1912 aa23.15■■□□□ 1.3
CCDC28B-201ENST00000373602 A8MXQ7 604 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 TRIM66O15016 1216 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 MAPK13O15264 365 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 LMNAP02545 664 aaKnown RBP23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 ANXA13P27216 316 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 ZACNQ401N2 412 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 TXNDC11Q6PKC3 985 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 DENND5BQ6ZUT9 1274 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 GUF1Q8N442 669 aaKnown RBP23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 NELL1Q92832 810 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 C8orf48Q96LL4 319 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 SMYD3Q9H7B4 428 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 USP34Q70CQ2 3546 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 MYO15AQ9UKN7 3530 aa23.14■■□□□ 1.29
CCDC28B-201ENST00000373602 PTPRZ1P23471 2315 aaPredicted RBP23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 RIF1Q5UIP0 2472 aaKnown RBP23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 IKBKBO14920 756 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 CDH8P55286 799 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 FAM160A1Q05DH4 1040 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 ITPRIPL2Q3MIP1 535 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 C1orf220Q5T0J3 134 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 ADSSL1Q8N142 457 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 B3GALNT2Q8NCR0 500 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 RIN3Q8TB24 985 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 SLC22A12Q96S37 553 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 TTLL2Q9BWV7 592 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 ELOVL4Q9GZR5 314 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 TRPC7Q9HCX4 862 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 GCNT4Q9P109 453 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 MAPK8IP1Q9UQF2 711 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 GREB1Q4ZG55 1949 aa23.13■■□□□ 1.29
CCDC28B-201ENST00000373602 ZNF638Q14966 1978 aaKnown RBP23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 FAM186AA6NE01 2351 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 TRAV19A0A0A6YYK7 116 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 F8VP50 259 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 USP17L7P0C7H9 530 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 NR2F2P24468 414 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 USP46P62068 366 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 NOP14P78316 857 aaKnown RBP23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 NUCB2P80303 420 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 LRRC32Q14392 662 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 SGSM1Q2NKQ1 1148 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 WDR44Q5JSH3 913 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 SV2AQ7L0J3 742 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 CCDC34Q96HJ3 373 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 CYP2S1Q96SQ9 504 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 B3GNT5Q9BYG0 378 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 ZNF518BQ9C0D4 1074 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 HPS4Q9NQG7 708 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 EHD2Q9NZN4 543 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 PCDHGA2Q9Y5H1 932 aa23.12■■□□□ 1.29
CCDC28B-201ENST00000373602 AKAP3O75969 853 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 CLSTN1O94985 981 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 RAP1GAPP47736 663 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 CACNA2D1P54289 1103 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 RUNX3Q13761 415 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 GAS6Q14393 721 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 DGKKQ5KSL6 1271 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 CC2D1AQ6P1N0 951 aaPredicted RBP23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 TSSK4Q6SA08 328 aa23.11■■□□□ 1.29
CCDC28B-201ENST00000373602 ZBTB44Q8NCP5 570 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms