RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 NUGGCQ68CJ6 796 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 NIPA1Q7RTP0 329 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 ZNF677Q86XU0 584 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 XXYLT1Q8NBI6 393 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 FBXO22Q8NEZ5 403 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 ZNF398Q8TD17 642 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 SLC20A1Q8WUM9 679 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 SEPT8Q92599 483 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 KIFAP3Q92845 792 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 MRPL38Q96DV4 380 aaKnown RBP12.15□□□□□ -0.46
USF1-201ENST00000368019 STAMBPL1Q96FJ0 436 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 TTC25Q96NG3 672 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 SENP7Q9BQF6 1050 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 NUP85Q9BW27 656 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 TEKT3Q9BXF9 490 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 LRMDAQ9H2I8 198 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 UBE2TQ9NPD8 197 aaPredicted RBP12.15□□□□□ -0.46
USF1-201ENST00000368019 C11orf16Q9NQ32 467 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 SEPT11Q9NVA2 429 aaKnown RBP12.15□□□□□ -0.46
USF1-201ENST00000368019 SETD4Q9NVD3 440 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 FGFR1OP2Q9NVK5 253 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 NKIRAS1Q9NYS0 192 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 RGL1Q9NZL6 768 aa12.15□□□□□ -0.46
USF1-201ENST00000368019 C5orf42Q9H799 3197 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ARHGEF35A5YM69 484 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 NOP56O00567 594 aaKnown RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 TP73O15350 636 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 GNAT1P11488 350 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 BRAFP15056 766 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ATF2P15336 505 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 STX2P32856 288 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 MXI1P50539 228 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 CYP2J2P51589 502 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 GPC3P51654 580 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 IL9RQ01113 521 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 FMO1Q01740 532 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 COL19A1Q14993 1142 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ZC2HC1CQ53FD0 456 aaPredicted RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 SGO2Q562F6 1265 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 FAM133BQ5BKY9 247 aaKnown RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 PCNX4Q63HM2 1172 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ACAD10Q6JQN1 1059 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 XRRA1Q6P2D8 792 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 TRIM50Q86XT4 487 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ARHGEF19Q8IW93 802 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 SYCP3Q8IZU3 236 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 CCDC89Q8N998 374 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ATL2Q8NHH9 583 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 TMC2Q8TDI7 906 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 FAM212AQ96EL1 285 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 SAMD11Q96NU1 681 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 PCDHB18PQ96TA0 734 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 DCLK3Q9C098 648 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 SSU72Q9NP77 194 aaKnown RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 FETUBQ9UGM5 382 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 CORO1CQ9ULV4 474 aaPredicted RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.14□□□□□ -0.47
USF1-201ENST00000368019 NEU2Q9Y3R4 380 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ARIH1Q9Y4X5 557 aaPredicted RBP12.14□□□□□ -0.47
USF1-201ENST00000368019 USH1CQ9Y6N9 552 aa12.14□□□□□ -0.47
USF1-201ENST00000368019 ANKRD63C9JTQ0 380 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 PI4K2BG5E9Z4 385 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 H3BNC9 293 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 TRAFD1O14545 582 aaPredicted RBP12.13□□□□□ -0.47
USF1-201ENST00000368019 PPP1R12AO14974 1030 aaPredicted RBP12.13□□□□□ -0.47
USF1-201ENST00000368019 PRPF4O43172 522 aaKnown RBP eCLIP12.13□□□□□ -0.47
USF1-201ENST00000368019 PSTPIP1O43586 416 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 GAS7O60861 476 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 GPR37L1O60883 481 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 LRRN2O75325 713 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 DCTN3O75935 186 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 CHRNA1P02708 482 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 CTSHP09668 335 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 LINC00271P0C7V0 271 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 RASSF2P50749 326 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 POLGP54098 1239 aaPredicted RBP12.13□□□□□ -0.47
USF1-201ENST00000368019 KCNJ2P63252 427 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 GTF2BQ00403 316 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 BLMHQ13867 455 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 NAA25Q14CX7 972 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 CCNG2Q16589 344 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 LONRF1Q17RB8 773 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 WASHC2DQ5SRD0 308 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 C1orf220Q5T0J3 134 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 ADAT2Q7Z6V5 191 aaKnown RBP12.13□□□□□ -0.47
USF1-201ENST00000368019 USP37Q86T82 979 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 NOP9Q86U38 636 aaKnown RBP12.13□□□□□ -0.47
USF1-201ENST00000368019 TPH2Q8IWU9 490 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 BANK1Q8NDB2 785 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 ZNF653Q96CK0 615 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 NINJ2Q9NZG7 142 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 SMG5Q9UPR3 1016 aaKnown RBP12.13□□□□□ -0.47
USF1-201ENST00000368019 EXOC7Q9UPT5 735 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 MUC6Q6W4X9 2439 aa12.13□□□□□ -0.47
USF1-201ENST00000368019 NFASCO94856 1347 aa12.12□□□□□ -0.47
USF1-201ENST00000368019 NRCAMQ92823 1304 aa12.12□□□□□ -0.47
USF1-201ENST00000368019 CCDC189A1A4V9 331 aa12.12□□□□□ -0.47
USF1-201ENST00000368019 FAM47DPA6NHR8 397 aa12.12□□□□□ -0.47
USF1-201ENST00000368019 SMIM23A6NLE4 172 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms