RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 MMGT1Q8N4V1 131 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 CNDP1Q96KN2 507 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 CCT7Q99832 543 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 TRIM51Q9BSJ1 452 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 ILKAPQ9H0C8 392 aaPredicted RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 GANQ9H2C0 597 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 SCUBE2Q9NQ36 999 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 CACNA2D2Q9NY47 1150 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 NFKBIL1Q9UBC1 381 aaPredicted RBP6.71□□□□□ -1.33
UPF2-201ENST00000356352 RNF112Q9ULX5 631 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 SOX13Q9UN79 622 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 AP4S1Q9Y587 144 aa6.71□□□□□ -1.33
UPF2-201ENST00000356352 PLA2R1Q13018 1463 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ZC3H11AO75152 810 aaKnown RBP eCLIP6.71□□□□□ -1.34
UPF2-201ENST00000356352 FYNP06241 537 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 RPL10AP62906 217 aaKnown RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 SLC9A5Q14940 896 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 USP39Q53GS9 565 aaKnown RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 MDH1BQ5I0G3 518 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 CYP4A22Q5TCH4 519 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 TRPM8Q7Z2W7 1104 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 NT5DC4Q86YG4 428 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 CENPLQ8N0S6 344 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 CYP4Z2PQ8N1L4 340 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 UBXN6Q9BZV1 441 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 RPRD1BQ9NQG5 326 aaKnown RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 GJB4Q9NTQ9 266 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 CYP39A1Q9NYL5 469 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 TULP4Q9NRJ4 1543 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ITGA8P53708 1063 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 NUP107P57740 925 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 EXOSC10Q01780 885 aaKnown RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 ACTN3Q08043 901 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 NFIXQ14938 502 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ZNF284Q2VY69 593 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 PREPLQ4J6C6 727 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 RFX8Q6ZV50 586 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 COL23A1Q86Y22 540 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 C10orf53Q8N6V4 93 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 DNAJC9Q8WXX5 260 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ZNF333Q96JL9 665 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 NAT9Q9BTE0 207 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ZNF518BQ9C0D4 1074 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 WDCPQ9H6R7 721 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 KRT84Q9NSB2 600 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 DPP3Q9NY33 737 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 PRR12Q9ULL5 1215 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 MBD5Q9P267 1494 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ZBTB7AO95365 584 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 CRTAMO95727 393 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 MYBP10242 640 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 THRAP10827 490 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 FCGR1AP12314 374 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ACADSP16219 412 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ITGALP20701 1170 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 COMTP21964 271 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 RPA1P27694 616 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 GTF2A2P52657 109 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 PLOD1Q02809 727 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 SF3B3Q15393 1217 aaKnown RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 TRIP10Q15642 601 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 CHI3L2Q15782 390 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 SMAD1Q15797 465 aaKnown RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 C16orf62Q7Z3J2 963 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 FGD2Q7Z6J4 655 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ST13P5Q8NFI4 369 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 CASP10Q92851 521 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 ZNF669Q96BR6 464 aaPredicted RBP6.71□□□□□ -1.34
UPF2-201ENST00000356352 THTPAQ9BU02 230 aa6.71□□□□□ -1.34
UPF2-201ENST00000356352 E7ENQ6 273 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CST8O60676 142 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 KPNA6O60684 536 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 PTPN7P35236 360 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 COILP38432 576 aaPredicted RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 OXCT1P55809 520 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 MRPS35P82673 323 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 TBL3Q12788 808 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 SCARF1Q14162 830 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ACAD10Q6JQN1 1059 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ZCCHC8Q6NZY4 707 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 MICU2Q8IYU8 434 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 C4orf33Q8N1A6 199 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 DAGLBQ8NCG7 672 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 MRPS31Q92665 395 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 SH3GL2Q99962 352 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ERP44Q9BS26 406 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 WDR41Q9HAD4 459 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 TRPM5Q9NZQ8 1165 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 NDUFA13Q9P0J0 144 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 PDP2Q9P2J9 529 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ZNF711Q9Y462 761 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ABCC3O15438 1527 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 B2RBV5 119 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 ASS1P00966 412 aaKnown RBP6.7□□□□□ -1.34
UPF2-201ENST00000356352 VDRP11473 427 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 EPB42P16452 691 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 BFSP2Q13515 415 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CUL2Q13617 745 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 NCF4Q15080 339 aa6.7□□□□□ -1.34
UPF2-201ENST00000356352 CLEC16AQ2KHT3 1053 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms