RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZNF598Q86UK7 904 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 ANKRD52Q8NB46 1076 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 EXD1Q8NHP7 514 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 AENQ8WTP8 325 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 CASKIN2Q8WXE0 1202 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 MAGOHBQ96A72 148 aaKnown RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 SLC4A5Q9BY07 1137 aa14.1□□□□□ -0.15
HMGB1-202ENST00000339872 PAK6Q9NQU5 681 aaPredicted RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 TIMM13Q9Y5L4 95 aaPredicted RBP14.1□□□□□ -0.15
HMGB1-202ENST00000339872 FSCN2O14926 492 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 RRP9O43818 475 aaKnown RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 KRT1P04264 644 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 SELPP16109 830 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TKTP29401 623 aaKnown RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 CHRNA3P32297 505 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 CDK7P50613 346 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 DR1Q01658 176 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 SIX1Q15475 284 aaPredicted RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 RTN4RL1Q86UN2 441 aaPredicted RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 FAM126BQ8IXS8 530 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 LINC01599Q8WXQ3 324 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 RNF25Q96BH1 459 aaPredicted RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 HERPUD2Q9BSE4 406 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 DDX43Q9NXZ2 648 aaKnown RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 NFU1Q9UMS0 254 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 C9IYK1 514 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 PI4K2BG5E9Z4 385 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 GABRDO14764 452 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 LRCH4O75427 683 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 GRAP2O75791 330 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 RALAP11233 206 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 EPHB4P54760 987 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TUSC3Q13454 348 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 CASP8Q14790 479 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TRADDQ15628 312 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 ODF2Q5BJF6 829 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 LRRC38Q5VT99 294 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TXNRD3NBQ6F5E7 133 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 SLC24A5Q71RS6 500 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TMEM110Q86TL2 294 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TMEM86AQ8N2M4 240 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 ACSF2Q96CM8 615 aaPredicted RBP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 TRIM51Q9BSJ1 452 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 HEMGNQ9BXL5 484 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 RNF208Q9H0X6 261 aa14.09□□□□□ -0.15
HMGB1-202ENST00000339872 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.09□□□□□ -0.15
HMGB1-202ENST00000339872 I3L4J1 428 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 B3GAT3O94766 335 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 FAM163BP0C2L3 166 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 PTPN1P18031 435 aaKnown RBP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 CDR1P51861 262 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 SNX16P57768 344 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 BFSP2Q13515 415 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 DHX34Q14147 1143 aaKnown RBP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 TIGD5Q53EQ6 642 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 TTC27Q6P3X3 843 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 CCDC137Q6PK04 289 aaKnown RBP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 OLFML1Q6UWY5 402 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 SCUBE3Q8IX30 993 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 HASPINQ8TF76 798 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 STK32AQ8WU08 396 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 RBM41Q96IZ5 413 aaKnown RBP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 UTP11Q9Y3A2 253 aaKnown RBP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 CLDN5O00501 218 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 MAP2K7O14733 419 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 CCL5P13501 91 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 GPD1P21695 349 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 CETN2P41208 172 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 LHX1P48742 406 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 AARSP49588 968 aaKnown RBP eCLIP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 SLC25A11Q02978 314 aaKnown RBP14.08□□□□□ -0.16
HMGB1-202ENST00000339872 CYP1B1Q16678 543 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 MDH1BQ5I0G3 518 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 KIAA0319Q5VV43 1072 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 GLB1LQ6UWU2 654 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 FUKQ8N0W3 1084 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 ARFGAP1Q8N6T3 406 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 MAIP1Q8WWC4 291 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 SLITRK1Q96PX8 696 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 B3GNT5Q9BYG0 378 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 SEZ6LQ9BYH1 1024 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 OSBPL8Q9BZF1 889 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 ZWILCHQ9H900 591 aa14.08□□□□□ -0.16
HMGB1-202ENST00000339872 C2CD4BA6NLJ0 364 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 PAPSS1O43252 624 aaPredicted RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 GABBR2O75899 941 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 RNF8O76064 485 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 EOMESO95936 686 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 ODC1P11926 461 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 LCP1P13796 627 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 PDGFRAP16234 1089 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 FLT3P36888 993 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 BRCC3P46736 316 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 ZNF143P52747 638 aaPredicted RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 SLC6A3Q01959 620 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 HLTFQ14527 1009 aaKnown RBP eCLIP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 TAF5Q15542 800 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 HADHQ16836 314 aaKnown RBP14.07□□□□□ -0.16
HMGB1-202ENST00000339872 SMTNL2Q2TAL5 461 aa14.07□□□□□ -0.16
HMGB1-202ENST00000339872 TRNP1Q6NT89 227 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms