RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 OXCT2Q9BYC2 517 aaPredicted RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ACAD9Q9H845 621 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ZNF624Q9P2J8 865 aaPredicted RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 SNX12Q9UMY4 172 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 SNX13Q9Y5W8 968 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 C2orf81A6NN90 581 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 GH2P01242 217 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 FDFT1P37268 417 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ZSWIM7Q19AV6 140 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ATP6AP1LQ52LC2 224 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PPIL6Q8IXY8 311 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 COMMD8Q9NX08 183 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 APEX2Q9UBZ4 518 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PCDHA6Q9UN73 950 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PCDHA8Q9Y5H6 950 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 FCER1AP12319 257 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 DYNLL1P63167 89 aaKnown RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 RDM1Q8NG50 284 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 DBNDD1Q9H9R9 158 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PDS5AQ29RF7 1337 aaKnown RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 KIAA0556O60303 1618 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ANXA9O76027 345 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ITIH4Q14624 930 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 POMGNT2Q8NAT1 580 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 CHAMP1Q96JM3 812 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 NLNQ9BYT8 704 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 RERGLQ9H628 205 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 WDR41Q9HAD4 459 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 POU1F1P28069 291 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 YWHABP31946 246 aaKnown RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 RCVRNP35243 200 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 RHAGQ02094 409 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 TRAPPC11Q7Z392 1133 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 SCUBE1Q8IWY4 988 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 CDK20Q8IZL9 346 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 TFB1MQ8WVM0 346 aaKnown RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PNMA8BQ9ULN7 279 aaPredicted RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 WEE2P0C1S8 567 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 LGALS3BPQ08380 585 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 TRAF2Q12933 501 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 LIN54Q6MZP7 749 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PHACTR4Q8IZ21 702 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 MIER2Q8N344 545 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 MYL12BO14950 172 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ZW10O43264 779 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 SCP2P22307 547 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 APOBEC3FQ8IUX4 373 aaKnown RBP9.04□□□□□ -0.96
NIPBL-201ENST00000282516 PADI4Q9UM07 663 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 DUSP12Q9UNI6 340 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 DYRK1BQ9Y463 629 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 ADGRG1Q9Y653 693 aa9.04□□□□□ -0.96
NIPBL-201ENST00000282516 TCHHQ07283 1943 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 ASB14A6NK59 587 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 CRYMQ14894 314 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 PGS1Q32NB8 556 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 TAF8Q7Z7C8 310 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 LRRC71Q8N4P6 559 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 SLC25A41Q8N5S1 370 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 POLR1BQ9H9Y6 1135 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 IL6STP40189 918 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 CCNG1P51959 295 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 PSMD4P55036 377 aaKnown RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 TRMT5Q32P41 509 aaKnown RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 DDI2Q5TDH0 399 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 ZNF614Q8N883 585 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 RNF146Q9NTX7 359 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 COMMD9Q9P000 198 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 BTN3A3O00478 584 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 AP3D1O14617 1153 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 CD4P01730 458 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 CYP2E1P05181 493 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 IFNGR2P38484 337 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 KCNB1Q14721 858 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 GRM4Q14833 912 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 GAS2L3Q86XJ1 694 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 OSBPL3Q9H4L5 887 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 BTBD3Q9Y2F9 522 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 NR5A2O00482 541 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 THRAP10827 490 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 LBPP18428 481 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 EPS8Q12929 822 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 CIAPIN1Q6FI81 312 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 TYW3Q6IPR3 259 aaKnown RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 SPIRE2Q8WWL2 714 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 EFCAB1Q9HAE3 211 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 ARHGEF40Q8TER5 1519 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 LOC102724428A0A0B4J2F2 783 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 P4HA2O15460 535 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 P4HBP07237 508 aaKnown RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 CHRM3P20309 590 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 SIK1P57059 783 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 SKP1P63208 163 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 TAF13Q15543 124 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 FAM98BQ52LJ0 330 aaKnown RBP9.03□□□□□ -0.96
NIPBL-201ENST00000282516 MZT2BQ6NZ67 158 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 FAM220AQ7Z4H9 259 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 COA1Q9GZY4 146 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 ZNF112Q9UJU3 913 aa9.03□□□□□ -0.96
NIPBL-201ENST00000282516 RFX7Q2KHR2 1363 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms