RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 VCPP55072 806 aaKnown RBP13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 ADAM17P78536 824 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 SMTNL2Q2TAL5 461 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 FOXR1Q6PIV2 292 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 ARFGAP1Q8N6T3 406 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 FOXP3Q9BZS1 431 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 ROPN1BQ9BZX4 212 aaPredicted RBP13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 EPN3Q9H201 632 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 ROPN1Q9HAT0 212 aaPredicted RBP13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 RSPH14Q9UHP6 348 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 HES2Q9Y543 173 aa13.6□□□□□ -0.23
SPTLC1-201ENST00000262554 SMIM23A6NLE4 172 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 NDC80O14777 642 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 RASGRF2O14827 1237 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 RECQL4O94761 1208 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 AGTP01019 485 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 ITGAVP06756 1048 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 CYP2B6P20813 491 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 CYP3A5P20815 502 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 KDELR1P24390 212 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 IL1R2P27930 398 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 ZNF143P52747 638 aaPredicted RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 SNX17Q15036 470 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 CCL14Q16627 93 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PTGISQ16647 500 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 GOLGA7BQ2TAP0 167 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 P3H1Q32P28 736 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 OR6B2Q6IFH4 312 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 ALKAL1Q6UXT8 129 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 ALLCQ8N6M5 410 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 TTC13Q8NBP0 860 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 KCTD6Q8NC69 237 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 UHMK1Q8TAS1 419 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 USP6NLQ92738 828 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 NKD2Q969F2 451 aaPredicted RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 C18orf25Q96B23 403 aaPredicted RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 MRPL45Q9BRJ2 306 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 APOL6Q9BWW8 343 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 FRMD8P1Q9BZ68 369 aaPredicted RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 CXCL16Q9H2A7 254 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 NXF3Q9H4D5 531 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 TUBGCP4Q9UGJ1 667 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 SLC12A6Q9UHW9 1150 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 UBQLN1Q9UMX0 589 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PIN4Q9Y237 131 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 DCDC2CA8MYV0 355 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 NDUFAB1O14561 156 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PPEF2O14830 753 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 TREHO43280 583 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 XPOTO43592 962 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 ACSL3O95573 720 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 TTC4O95801 387 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 CD4P01730 458 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PFKMP08237 780 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 GNAT1P11488 350 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 GPD1P21695 349 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 MIPP30301 263 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PCK1P35558 622 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 SNX16P57768 344 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PLCB3Q01970 1234 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 HIC1Q14526 733 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 KCNT1Q5JUK3 1230 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 GLRA4Q5JXX5 417 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 UBAP2Q5T6F2 1119 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 PPP1R26Q5T8A7 1209 aaPredicted RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 C9orf57Q5W0N0 161 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 HIBCHQ6NVY1 386 aaPredicted RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 ACOT1Q86TX2 421 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 UNC93AQ86WB7 457 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 C12orf29Q8N999 325 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 EPS8L3Q8TE67 593 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 HAUS1Q96CS2 278 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 TSPAN18Q96SJ8 248 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 APBA2Q99767 749 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 DDX23Q9BUQ8 820 aaKnown RBP13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 HESX1Q9UBX0 185 aa13.59□□□□□ -0.23
SPTLC1-201ENST00000262554 C17orf102A2RUQ5 167 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 E5RJQ4 531 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 DNALI1O14645 258 aaPredicted RBP13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 TRUB2O95900 331 aaKnown RBP13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 SETSIPP0DME0 302 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 CCT5P48643 541 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 ARSEP51690 589 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 CRYBB1P53674 252 aaPredicted RBP13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 IRX5P78411 483 aaPredicted RBP13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 BEX3Q00994 111 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 OASLQ15646 514 aaKnown RBP13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 C17orf99Q6UX52 265 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 FAM183BPQ6ZVS7 135 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 BBS12Q6ZW61 710 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 NME8Q8N427 588 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 OR6B3Q8NGW1 331 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 SOCS4Q8WXH5 440 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 ZNF560Q96MR9 790 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 CNPY3Q9BT09 278 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 DNAI2Q9GZS0 605 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 RABEP2Q9H5N1 569 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 PCSK1NQ9UHG2 260 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 USP18Q9UMW8 372 aa13.58□□□□□ -0.24
SPTLC1-201ENST00000262554 SGK1O00141 431 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms