RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 EVA1BQ9NVM1 165 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 GTF3C4Q9UKN8 822 aa13.28□□□□□ -0.28
USP40-201ENST00000251722 TBC1D12O60347 775 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 HADHAP40939 763 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 SLCO1A2P46721 670 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 PLA2G4AP47712 749 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 SERPINB8P50452 374 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 MTTPP55157 894 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 LRRC71Q8N4P6 559 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 ZNF668Q96K58 619 aaPredicted RBP13.27□□□□□ -0.28
USP40-201ENST00000251722 UBXN6Q9BZV1 441 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 FBXO44Q9H4M3 255 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 EURLQ9NYK6 297 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 MROH7Q68CQ1 1323 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 XYLBO75191 536 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 CCDC153Q494R4 210 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 TUBA3EQ6PEY2 450 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 TRAF7Q6Q0C0 670 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 LRIG3Q6UXM1 1119 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 SKA1Q96BD8 255 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 CEP19Q96LK0 163 aa13.27□□□□□ -0.28
USP40-201ENST00000251722 CORO1CQ9ULV4 474 aaPredicted RBP13.27□□□□□ -0.28
USP40-201ENST00000251722 NPHP3-ACAD11A0A0J9YXS1 232 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 TLR2O60603 784 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 ALDH2P05091 517 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 HMOX2P30519 316 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 ATP6V1E1P36543 226 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 IRAK1P51617 712 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 HIST2H2ACQ16777 129 aaPredicted RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 HIST2H2AA3Q6FI13 130 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 RRAGCQ9HB90 399 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 AIPL1Q9NZN9 384 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 TMCO1Q9UM00 188 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 AAR2Q9Y312 384 aaKnown RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 CAB39Q9Y376 341 aaPredicted RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 SESN1Q9Y6P5 492 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 POLR1AO95602 1720 aaPredicted RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 ADCY1Q08828 1119 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 ANKRD23Q86SG2 305 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 TERB1Q8NA31 727 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 SYTL5Q8TDW5 730 aaPredicted RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 DDI1Q8WTU0 396 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 NAF1Q96HR8 494 aaKnown RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 BRD8Q9H0E9 1235 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 ASB7Q9H672 318 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 A1CFQ9NQ94 594 aaKnown RBP13.27□□□□□ -0.29
USP40-201ENST00000251722 STK39Q9UEW8 545 aa13.27□□□□□ -0.29
USP40-201ENST00000251722 NCAM2O15394 837 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 GYG2O15488 501 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 SKAP2O75563 359 aaPredicted RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 POLBP06746 335 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 VHLP40337 213 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 ADARP55265 1226 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 PPP2R2AP63151 447 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 POU5F1BQ06416 359 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 GPAT2Q6NUI2 795 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 CCT8L2Q96SF2 557 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 PRPF4O43172 522 aaKnown RBP eCLIP13.26□□□□□ -0.29
USP40-201ENST00000251722 EIF2B2P49770 351 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 TARS2Q9BW92 718 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 SEZ6LQ9BYH1 1024 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 WWP1Q9H0M0 922 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 ETNK1Q9HBU6 452 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 MMEP08473 750 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 PDGFRBP09619 1106 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 FBXW4P57775 412 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 CTXN3Q4LDR2 81 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 FASTKD1Q53R41 847 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 KLHDC7AQ5VTJ3 777 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 NKX2-3Q8TAU0 364 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 SLC35G2Q8TBE7 412 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 ABHD8Q96I13 439 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 MCEEQ96PE7 176 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 TRPV2Q9Y5S1 764 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 FAM95CA0A1B0GW59 222 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 RTN3O95197 1032 aaPredicted RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 ITGB3P05106 788 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 ANXA11P50995 505 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 ACAD10Q6JQN1 1059 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 PATL1Q86TB9 770 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 ZNF554Q86TJ5 538 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 ATP6V1G3Q96LB4 118 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 EMC3Q9P0I2 261 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 UMODL1Q5DID0 1318 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 GTPBP10A4D1E9 387 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 EIF4E1BA6NMX2 242 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 H0Y626 953 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 H2AFYO75367 372 aaKnown RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 PTPRN2Q92932 1015 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 FBXO32Q969P5 355 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 FHDC1Q9C0D6 1143 aaPredicted RBP13.26□□□□□ -0.29
USP40-201ENST00000251722 ATAD3AQ9NVI7 634 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 ITM2BQ9Y287 266 aa13.26□□□□□ -0.29
USP40-201ENST00000251722 VWA5AO00534 786 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 GUCY1B2O75343 617 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 AGTP01019 485 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 CASP1P29466 404 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 PMS1P54277 932 aaKnown RBP13.25□□□□□ -0.29
USP40-201ENST00000251722 GALCP54803 685 aa13.25□□□□□ -0.29
USP40-201ENST00000251722 KRR1Q13601 381 aaKnown RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms