RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W AIM18P38884 321 aa-0.09□□□□□ -2.42
PRP42YDR235W YAL064WP39711 94 aa-0.09□□□□□ -2.42
PRP42YDR235W APQ12P40532 138 aa-0.09□□□□□ -2.42
PRP42YDR235W RPS29BP41058 56 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W GIM5Q04493 163 aa-0.09□□□□□ -2.42
PRP42YDR235W SOM1Q05676 74 aa-0.09□□□□□ -2.42
PRP42YDR235W YLR194CQ05777 254 aa-0.09□□□□□ -2.42
PRP42YDR235W NSL1Q12143 216 aa-0.09□□□□□ -2.42
PRP42YDR235W YOR376W-AQ3E805 51 aa-0.09□□□□□ -2.42
PRP42YDR235W KTI11Q3E840 82 aa-0.09□□□□□ -2.42
PRP42YDR235W ENV10Q99382 181 aa-0.09□□□□□ -2.42
PRP42YDR235W TAO3P40468 2376 aa-0.09□□□□□ -2.42
PRP42YDR235W POL2P21951 2222 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W YHR213WP0CI67 198 aa-0.09□□□□□ -2.42
PRP42YDR235W MRPL11P36521 249 aaPredicted RBP-0.09□□□□□ -2.42
PRP42YDR235W SRP14P38985 146 aa-0.09□□□□□ -2.42
PRP42YDR235W YIL163CP40448 117 aa-0.09□□□□□ -2.42
PRP42YDR235W GPI2P46961 280 aa-0.09□□□□□ -2.42
PRP42YDR235W YJR128WP47162 119 aa-0.09□□□□□ -2.42
PRP42YDR235W VMA10P48836 114 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W YGL193CP53097 103 aa-0.09□□□□□ -2.42
PRP42YDR235W HHO1P53551 258 aa-0.09□□□□□ -2.42
PRP42YDR235W GIM3P53900 129 aa-0.09□□□□□ -2.42
PRP42YDR235W TMA20P89886 181 aaPredicted RBP-0.09□□□□□ -2.42
PRP42YDR235W ARL3Q02804 198 aa-0.09□□□□□ -2.42
PRP42YDR235W COF1Q03048 143 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W SMD2Q06217 110 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W EFG1Q3E705 233 aaKnown RBP-0.09□□□□□ -2.42
PRP42YDR235W COA6Q3E846 104 aa-0.09□□□□□ -2.42
PRP42YDR235W PET20Q99373 253 aa-0.09□□□□□ -2.42
PRP42YDR235W YLR255CO13574 117 aa-0.1□□□□□ -2.43
PRP42YDR235W HSP12P22943 109 aaKnown RBP-0.1□□□□□ -2.43
PRP42YDR235W YCR050CP25630 102 aa-0.1□□□□□ -2.43
PRP42YDR235W HYM1P32464 399 aa-0.1□□□□□ -2.43
PRP42YDR235W SFT2P38166 215 aa-0.1□□□□□ -2.43
PRP42YDR235W YEA6P39953 335 aa-0.1□□□□□ -2.43
PRP42YDR235W PAM16P42949 149 aa-0.1□□□□□ -2.43
PRP42YDR235W LSM1P47017 172 aaKnown RBP-0.1□□□□□ -2.43
PRP42YDR235W EFM5P53200 248 aaKnown RBP-0.1□□□□□ -2.43
PRP42YDR235W MRPS12P53732 153 aa-0.1□□□□□ -2.43
PRP42YDR235W YIL014C-AQ02598 104 aa-0.1□□□□□ -2.43
PRP42YDR235W YLR296WQ05898 108 aa-0.1□□□□□ -2.43
PRP42YDR235W HPA2Q06592 156 aa-0.1□□□□□ -2.43
PRP42YDR235W YLR053CQ12026 108 aa-0.1□□□□□ -2.43
PRP42YDR235W FCF2Q12035 217 aaPredicted RBP-0.1□□□□□ -2.43
PRP42YDR235W HUT1Q12520 339 aa-0.1□□□□□ -2.43
PRP42YDR235W DNA2P38859 1522 aa-0.1□□□□□ -2.43
PRP42YDR235W SEC7P11075 2009 aaKnown RBP-0.11□□□□□ -2.43
PRP42YDR235W MRPL31P14063 131 aaPredicted RBP-0.11□□□□□ -2.43
PRP42YDR235W QCR10P37299 77 aa-0.11□□□□□ -2.43
PRP42YDR235W DER1P38307 211 aa-0.11□□□□□ -2.43
PRP42YDR235W AME1P38313 324 aa-0.11□□□□□ -2.43
PRP42YDR235W PRS3P38689 320 aaKnown RBP-0.11□□□□□ -2.43
PRP42YDR235W HPM1P40481 377 aa-0.11□□□□□ -2.43
PRP42YDR235W BRP1P53194 125 aa-0.11□□□□□ -2.43
PRP42YDR235W YGR017WP53210 297 aa-0.11□□□□□ -2.43
PRP42YDR235W PAU12P53343 120 aa-0.11□□□□□ -2.43
PRP42YDR235W CSN9Q03981 162 aa-0.11□□□□□ -2.43
PRP42YDR235W TVP18Q04767 167 aa-0.11□□□□□ -2.43
PRP42YDR235W ATG38Q05789 226 aaKnown RBP-0.11□□□□□ -2.43
PRP42YDR235W YPD1Q07688 167 aa-0.11□□□□□ -2.43
PRP42YDR235W YLR285C-AQ3E771 56 aa-0.11□□□□□ -2.43
PRP42YDR235W SAC3P46674 1301 aa-0.11□□□□□ -2.43
PRP42YDR235W HAP3P13434 144 aa-0.12□□□□□ -2.43
PRP42YDR235W ANB1P19211 157 aa-0.12□□□□□ -2.43
PRP42YDR235W RPC19P28000 142 aaKnown RBP-0.12□□□□□ -2.43
PRP42YDR235W EMP24P32803 203 aaKnown RBP-0.12□□□□□ -2.43
PRP42YDR235W SUI1P32911 108 aaKnown RBP-0.12□□□□□ -2.43
PRP42YDR235W YAP3P38749 330 aa-0.12□□□□□ -2.43
PRP42YDR235W YHR130CP38834 111 aa-0.12□□□□□ -2.43
PRP42YDR235W YHR173CP38864 112 aa-0.12□□□□□ -2.43
PRP42YDR235W CYB5P40312 120 aa-0.12□□□□□ -2.43
PRP42YDR235W ATP19P81451 68 aa-0.12□□□□□ -2.43
PRP42YDR235W YDR476CQ03362 224 aa-0.12□□□□□ -2.43
PRP42YDR235W LDB18Q07887 179 aa-0.12□□□□□ -2.43
PRP42YDR235W NAT5Q08689 176 aa-0.12□□□□□ -2.43
PRP42YDR235W YOR097CQ12274 175 aaPredicted RBP-0.12□□□□□ -2.43
PRP42YDR235W YGR240C-AQ3E786 66 aa-0.12□□□□□ -2.43
PRP42YDR235W CMC2Q3E7A4 109 aa-0.12□□□□□ -2.43
PRP42YDR235W DDP1Q99321 188 aaKnown RBP-0.12□□□□□ -2.43
PRP42YDR235W YRF1-6P53819 1859 aa-0.12□□□□□ -2.43
PRP42YDR235W PAU21P0CE86 164 aa-0.13□□□□□ -2.43
PRP42YDR235W PAU22P0CE87 164 aa-0.13□□□□□ -2.43
PRP42YDR235W HMRA2P0CY13 119 aa-0.13□□□□□ -2.43
PRP42YDR235W PAU24P38155 120 aa-0.13□□□□□ -2.43
PRP42YDR235W GCV3P39726 170 aaPredicted RBP-0.13□□□□□ -2.43
PRP42YDR235W VPS55P47111 140 aa-0.13□□□□□ -2.43
PRP42YDR235W YNL190WP53872 204 aa-0.13□□□□□ -2.43
PRP42YDR235W ELC1Q03071 99 aa-0.13□□□□□ -2.43
PRP42YDR235W RRT7Q07829 113 aa-0.13□□□□□ -2.43
PRP42YDR235W YDR010CQ12426 110 aa-0.13□□□□□ -2.43
PRP42YDR235W TY4B-HP0C2J7 1802 aa-0.13□□□□□ -2.43
PRP42YDR235W TRM732Q03496 1420 aa-0.13□□□□□ -2.43
PRP42YDR235W YOR1P53049 1477 aa-0.13□□□□□ -2.43
PRP42YDR235W CCW14O13547 238 aa-0.13□□□□□ -2.43
PRP42YDR235W RPL22AP05749 121 aaKnown RBP-0.13□□□□□ -2.43
PRP42YDR235W QCR2P07257 368 aa-0.13□□□□□ -2.43
PRP42YDR235W PAU2P32612 120 aa-0.13□□□□□ -2.43
PRP42YDR235W GSP1P32835 219 aaKnown RBP-0.13□□□□□ -2.43
PRP42YDR235W YKL044WP36092 106 aa-0.13□□□□□ -2.43
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms