RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C RPL30P14120 105 aaKnown RBP-0.55□□□□□ -2.5
PCF11YDR228C YGL193CP53097 103 aa-0.55□□□□□ -2.5
PCF11YDR228C SGF11Q03067 99 aa-0.55□□□□□ -2.5
PCF11YDR228C UBR1P19812 1950 aa-0.55□□□□□ -2.5
PCF11YDR228C RPA12P32529 125 aaKnown RBP-0.56□□□□□ -2.5
PCF11YDR228C YER181CP40097 107 aa-0.56□□□□□ -2.5
PCF11YDR228C COF1Q03048 143 aaKnown RBP-0.56□□□□□ -2.5
PCF11YDR228C RRT7Q07829 113 aa-0.56□□□□□ -2.5
PCF11YDR228C SEC16P48415 2195 aaKnown RBP-0.56□□□□□ -2.5
PCF11YDR228C YSF3P0C074 85 aaPredicted RBP-0.56□□□□□ -2.5
PCF11YDR228C FYV5P25585 152 aa-0.56□□□□□ -2.5
PCF11YDR228C MRPS12P53732 153 aa-0.56□□□□□ -2.5
PCF11YDR228C YPD1Q07688 167 aa-0.56□□□□□ -2.5
PCF11YDR228C YER121WP40076 114 aa-0.58□□□□□ -2.5
PCF11YDR228C YLR296WQ05898 108 aa-0.58□□□□□ -2.5
PCF11YDR228C NAT5Q08689 176 aa-0.58□□□□□ -2.5
PCF11YDR228C RPL35AP0CX84 120 aaKnown RBP-0.58□□□□□ -2.5
PCF11YDR228C RPL35BP0CX85 120 aaKnown RBP-0.58□□□□□ -2.5
PCF11YDR228C EGD2P38879 174 aaKnown RBP-0.58□□□□□ -2.5
PCF11YDR228C YJL218WP40892 196 aaKnown RBP-0.58□□□□□ -2.5
PCF11YDR228C ICS3P47034 131 aa-0.58□□□□□ -2.5
PCF11YDR228C HHO1P53551 258 aa-0.58□□□□□ -2.5
PCF11YDR228C YPL067CQ02754 198 aa-0.58□□□□□ -2.5
PCF11YDR228C RUB1Q03919 77 aa-0.58□□□□□ -2.5
PCF11YDR228C TY4B-HP0C2J7 1802 aa-0.59□□□□□ -2.5
PCF11YDR228C SNT2P53127 1403 aa-0.59□□□□□ -2.5
PCF11YDR228C RPS1BP23248 255 aaKnown RBP-0.59□□□□□ -2.5
PCF11YDR228C APQ12P40532 138 aa-0.59□□□□□ -2.5
PCF11YDR228C FCF2Q12035 217 aaPredicted RBP-0.59□□□□□ -2.5
PCF11YDR228C ENV10Q99382 181 aa-0.59□□□□□ -2.5
PCF11YDR228C SFT2P38166 215 aa-0.6□□□□□ -2.51
PCF11YDR228C PHB1P40961 287 aa-0.6□□□□□ -2.51
PCF11YDR228C GRX3Q03835 250 aa-0.6□□□□□ -2.51
PCF11YDR228C HPA2Q06592 156 aa-0.6□□□□□ -2.51
PCF11YDR228C YOR385WQ08909 290 aa-0.6□□□□□ -2.51
PCF11YDR228C RSF2P46974 1380 aa-0.6□□□□□ -2.51
PCF11YDR228C HAP3P13434 144 aa-0.61□□□□□ -2.51
PCF11YDR228C YGL149WP53116 101 aa-0.61□□□□□ -2.51
PCF11YDR228C OCA6Q12454 224 aa-0.61□□□□□ -2.51
PCF11YDR228C YGR240C-AQ3E786 66 aa-0.61□□□□□ -2.51
PCF11YDR228C EFM5P53200 248 aaKnown RBP-0.61□□□□□ -2.51
PCF11YDR228C LCL1Q02786 101 aa-0.61□□□□□ -2.51
PCF11YDR228C YPR202WQ08993 238 aa-0.61□□□□□ -2.51
PCF11YDR228C GTT2Q12390 233 aa-0.61□□□□□ -2.51
PCF11YDR228C GSP1P32835 219 aaKnown RBP-0.62□□□□□ -2.51
PCF11YDR228C RAF1Q06891 181 aa-0.62□□□□□ -2.51
PCF11YDR228C YLR053CQ12026 108 aa-0.62□□□□□ -2.51
PCF11YDR228C YGL041C-BQ3E750 60 aa-0.62□□□□□ -2.51
PCF11YDR228C PET20Q99373 253 aa-0.62□□□□□ -2.51
PCF11YDR228C MRPL44P19956 98 aa-0.63□□□□□ -2.51
PCF11YDR228C YIL163CP40448 117 aa-0.63□□□□□ -2.51
PCF11YDR228C PHS1P40857 217 aa-0.63□□□□□ -2.51
PCF11YDR228C SOM1Q05676 74 aa-0.63□□□□□ -2.51
PCF11YDR228C CCW14O13547 238 aa-0.63□□□□□ -2.51
PCF11YDR228C ADK1P07170 222 aaKnown RBP-0.63□□□□□ -2.51
PCF11YDR228C RPO41P13433 1351 aaKnown RBP-0.64□□□□□ -2.51
PCF11YDR228C RAV2Q03956 351 aa-0.64□□□□□ -2.51
PCF11YDR228C FIG1P38224 298 aa-0.65□□□□□ -2.51
PCF11YDR228C EFG1Q3E705 233 aaKnown RBP-0.65□□□□□ -2.51
PCF11YDR228C YFR009W-AP0C5M9 85 aa-0.65□□□□□ -2.51
PCF11YDR228C HSP12P22943 109 aaKnown RBP-0.65□□□□□ -2.51
PCF11YDR228C AIM18P38884 321 aa-0.65□□□□□ -2.51
PCF11YDR228C GAT4P40569 121 aa-0.65□□□□□ -2.51
PCF11YDR228C LSM8P47093 109 aaKnown RBP-0.65□□□□□ -2.51
PCF11YDR228C YRF1-6P53819 1859 aa-0.66□□□□□ -2.51
PCF11YDR228C RPL36BO14455 100 aaKnown RBP-0.66□□□□□ -2.52
PCF11YDR228C RPL36AP05745 100 aaPredicted RBP-0.66□□□□□ -2.52
PCF11YDR228C QCR2P07257 368 aa-0.66□□□□□ -2.52
PCF11YDR228C RPS1AP33442 255 aaKnown RBP-0.66□□□□□ -2.52
PCF11YDR228C HSP10P38910 106 aa-0.66□□□□□ -2.52
PCF11YDR228C YNL198CP40166 100 aa-0.66□□□□□ -2.52
PCF11YDR228C BRP1P53194 125 aa-0.66□□□□□ -2.52
PCF11YDR228C GIM3P53900 129 aa-0.66□□□□□ -2.52
PCF11YDR228C YDR476CQ03362 224 aa-0.66□□□□□ -2.52
PCF11YDR228C MAK3Q03503 176 aa-0.66□□□□□ -2.52
PCF11YDR228C UTP20P35194 2493 aaKnown RBP-0.66□□□□□ -2.52
PCF11YDR228C ECM5Q03214 1411 aa-0.66□□□□□ -2.52
PCF11YDR228C URB1P34241 1764 aaKnown RBP-0.66□□□□□ -2.52
PCF11YDR228C YPR117WQ06116 2489 aa-0.67□□□□□ -2.52
PCF11YDR228C PRS3P38689 320 aaKnown RBP-0.67□□□□□ -2.52
PCF11YDR228C HPM1P40481 377 aa-0.67□□□□□ -2.52
PCF11YDR228C TOR2P32600 2474 aaKnown RBP-0.67□□□□□ -2.52
PCF11YDR228C RPL22AP05749 121 aaKnown RBP-0.67□□□□□ -2.52
PCF11YDR228C LSM1P47017 172 aaKnown RBP-0.67□□□□□ -2.52
PCF11YDR228C DDP1Q99321 188 aaKnown RBP-0.67□□□□□ -2.52
PCF11YDR228C YPK9Q12697 1472 aa-0.68□□□□□ -2.52
PCF11YDR228C RTC6O14464 93 aa-0.68□□□□□ -2.52
PCF11YDR228C YGR201CP42936 225 aa-0.68□□□□□ -2.52
PCF11YDR228C SPG1P50088 95 aa-0.68□□□□□ -2.52
PCF11YDR228C YGR017WP53210 297 aa-0.68□□□□□ -2.52
PCF11YDR228C PKR1Q03880 122 aaKnown RBP-0.68□□□□□ -2.52
PCF11YDR228C RIM15P43565 1770 aa-0.68□□□□□ -2.52
PCF11YDR228C SEC7P11075 2009 aaKnown RBP-0.69□□□□□ -2.52
PCF11YDR228C PBI2P0CT04 75 aaKnown RBP-0.69□□□□□ -2.52
PCF11YDR228C GCV3P39726 170 aaPredicted RBP-0.69□□□□□ -2.52
PCF11YDR228C SDH7Q04401 133 aa-0.69□□□□□ -2.52
PCF11YDR228C YIL134C-AQ45U18 67 aa-0.69□□□□□ -2.52
PCF11YDR228C PAU21P0CE86 164 aa-0.69□□□□□ -2.52
PCF11YDR228C PAU22P0CE87 164 aa-0.69□□□□□ -2.52
PCF11YDR228C YAP3P38749 330 aa-0.69□□□□□ -2.52
Retrieved 100 of 5,963 RNA–protein pairs in 47.1 ms