RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 OVGP1Q12889 678 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ATP13A4Q4VNC1 1196 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 TFDP3Q5H9I0 405 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 APTXQ7Z2E3 356 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 NUDCD3Q8IVD9 361 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 PPIL6Q8IXY8 311 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 IFT43Q96FT9 208 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 CASTOR2A6NHX0 329 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 PPFIA2O75334 1257 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 KRT38O76015 456 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 FLT3P36888 993 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 HIRAP54198 1017 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 POU5F1BQ06416 359 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ZNF844Q08AG5 666 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 CAPSQ13938 189 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 TMC3Q7Z5M5 1100 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ADGRF2Q8IZF7 708 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 SP110Q9HB58 689 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 GTSE1Q9NYZ3 720 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.34□□□□□ -0.911e-7■■■■□ 19.4
PDLIM5-222ENST00000615540 UPP2O95045 317 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 FMO1Q01740 532 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 CELF3Q5SZQ8 465 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 OR5B17Q8NGF7 314 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ZNF606Q8WXB4 792 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 MROH8Q9H579 483 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 KRT82Q9NSB4 513 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 PCDHGC5Q9Y5F6 944 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 F8VP50 259 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 RIPK2O43353 540 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 GMNNO75496 209 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 GZMAP12544 262 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ARFIP2P53365 341 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 IFI35P80217 286 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ZNF200P98182 395 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 NR1H3Q13133 447 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 DENND1BQ6P3S1 775 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 MYLK4Q86YV6 388 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 LRRC37BQ96QE4 947 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 VPS33BQ9H267 617 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 PABPC3Q9H361 631 aaKnown RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ZFYVE28Q9HCC9 887 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 WDR35Q9P2L0 1181 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 COG5Q9UP83 839 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 PCDHA3Q9Y5H8 950 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 GOLGA8CPA6NN73 597 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 MEFVO15553 781 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 DIAPH2O60879 1101 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ZC3H11AO75152 810 aaKnown RBP eCLIP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 ETFBP38117 255 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 COPS2P61201 443 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 GNASQ5JWF2 1037 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 FKBP1CQ5VVH2 108 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 SEPT5Q99719 369 aaPredicted RBP9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 TTYH3Q9C0H2 523 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 PSD3Q9NYI0 1048 aa9.34□□□□□ -0.91
PDLIM5-222ENST00000615540 M0QYT0 321 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 OPHN1O60890 802 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 ENO1P06733 434 aaKnown RBP9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 MROH9Q5TGP6 573 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 ERVK-5Q9HDB9 667 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 NCANO14594 1321 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 ANKRD36CQ5JPF3 1778 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 A0A1B0GUA9 196 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 PPP1R12AO14974 1030 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 EGFRP00533 1210 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 CD4P01730 458 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 TAF6P49848 677 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 BMT2Q1RMZ1 405 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 ANO4Q32M45 955 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 EP400NLQ6ZTU2 488 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 PALB2Q86YC2 1186 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 KATNAL1Q9BW62 490 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 ETNK1Q9HBU6 452 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 TSPAN16Q9UKR8 245 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 HES2Q9Y543 173 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 CYB561D2O14569 222 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 GYG2O15488 501 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 LGALS2P05162 132 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 RBP3P10745 1247 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 PMLP29590 882 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 GEMIN4P57678 1058 aaKnown RBP9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 TAF11Q15544 211 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 SCUBE3Q8IX30 993 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 SAMD3Q8N6K7 520 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 MICAL1Q8TDZ2 1067 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 RSAD1Q9HA92 442 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 WHRNQ9P202 907 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 N4BP2Q86UW6 1770 aaPredicted RBP9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 FAM47DPA6NHR8 397 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 SPATA31C2B4DYI2 1134 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 HAUS5O94927 633 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 CYP1A2P05177 515 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 KRT4P19013 534 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 COG7P83436 770 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 MAMLD1Q13495 774 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 RIOX2Q8IUF8 465 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 CCNYL1Q8N7R7 359 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 NUDCD1Q96RS6 583 aa9.33□□□□□ -0.92
PDLIM5-222ENST00000615540 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms