RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 ELK3P41970 407 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 STAT5BP51692 787 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 HADHBP55084 474 aaKnown RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 GRAMD1BQ3KR37 738 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 RNF43Q68DV7 783 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 RGS9BPQ6ZS82 235 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 CCDC60Q8IWA6 550 aaPredicted RBP13.14□□□□□ -0.31
MSH6-213ENST00000614496 RNPEPL1Q9HAU8 725 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.14□□□□□ -0.31
MSH6-213ENST00000614496 ZFATQ9P243 1243 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 MYH11P35749 1972 aa13.14□□□□□ -0.31
MSH6-213ENST00000614496 CSDE1O75534 798 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 CETPP11597 493 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 CALB2P22676 271 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 WDR4P57081 412 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 NOMO3P69849 1222 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 CYP1B1Q16678 543 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 FAM228AQ86W67 206 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 WDR75Q8IWA0 830 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 GLIS1Q8NBF1 620 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.13□□□□□ -0.31
MSH6-213ENST00000614496 SLITRK1Q96PX8 696 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 FIZ1Q96SL8 496 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 VPS11Q9H270 941 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 ACAD9Q9H845 621 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 C17orf75Q9HAS0 396 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 UBIAD1Q9Y5Z9 338 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 DOCK2Q92608 1830 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 COL14A1Q05707 1796 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 CDH8P55286 799 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 CHI3L2Q15782 390 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 SGSM1Q2NKQ1 1148 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 OTOAQ7RTW8 1153 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 NDUFAF2Q8N183 169 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 SLC26A7Q8TE54 656 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 STK32AQ8WU08 396 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 CDKL2Q92772 493 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 C2orf71A6NGG8 1288 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 CFLARO15519 480 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 KCNA3P22001 575 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 ABCD1P33897 745 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 MMP14P50281 582 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 NCKAP1LP55160 1127 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 SESN2P58004 480 aaPredicted RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 ZBTB41Q5SVQ8 909 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 DHX35Q9H5Z1 703 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 ZNF268Q14587 947 aaPredicted RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 SULF1Q8IWU6 871 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 ALKBH8Q96BT7 664 aaKnown RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 PCDH9Q9HC56 1237 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 FBXO6Q9NRD1 293 aaPredicted RBP13.13□□□□□ -0.31
MSH6-213ENST00000614496 SLC24A2Q9UI40 661 aa13.13□□□□□ -0.31
MSH6-213ENST00000614496 LOC100653049A0A140TA62 436 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 KRT34O76011 436 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 ZCCHC18P0CG32 403 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 TCF4P15884 667 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 TAP1Q03518 808 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 FAAP100Q0VG06 881 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 C12orf56Q8IXR9 622 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 RTKN2Q8IZC4 609 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 SLC25A41Q8N5S1 370 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 PPP1R36Q96LQ0 422 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 CGRRF1Q99675 332 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 DCLRE1BQ9H816 532 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 NDE1Q9NXR1 346 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 MTO1Q9Y2Z2 717 aaKnown RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 STARD13Q9Y3M8 1113 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 OSBPP22059 807 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 RFC1P35251 1148 aaPredicted RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 PDK4Q16654 411 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 ZACNQ401N2 412 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 CCDC14Q49A88 953 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 WLSQ5T9L3 541 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 SAMD7Q7Z3H4 446 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 PRPF39Q86UA1 669 aaKnown RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 FAM13CQ8NE31 585 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 PRPF31Q8WWY3 499 aaKnown RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 HERPUD2Q9BSE4 406 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 TXLNGYQ9BZA5 131 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 SLC17A7Q9P2U7 560 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 SHOC2Q9UQ13 582 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 OATP04181 439 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 VHLP40337 213 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 RIPK1Q13546 671 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 KPNB1Q14974 876 aaKnown RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 SNX30Q5VWJ9 437 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 DNAAF3Q8N9W5 541 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 C12orf50Q8NA57 414 aaPredicted RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 SCYL1Q96KG9 808 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 AAASQ9NRG9 546 aa13.12□□□□□ -0.31
MSH6-213ENST00000614496 APOBEC2Q9Y235 224 aaKnown RBP13.12□□□□□ -0.31
MSH6-213ENST00000614496 KBTBD13C9JR72 458 aa13.11□□□□□ -0.31
MSH6-213ENST00000614496 EDF1O60869 148 aaKnown RBP13.11□□□□□ -0.31
MSH6-213ENST00000614496 MCL1Q07820 350 aa13.11□□□□□ -0.31
MSH6-213ENST00000614496 SURF1Q15526 300 aa13.11□□□□□ -0.31
MSH6-213ENST00000614496 DPY19L2P1Q6NXN4 242 aa13.11□□□□□ -0.31
MSH6-213ENST00000614496 TEKT4Q8WW24 435 aa13.11□□□□□ -0.31
MSH6-213ENST00000614496 CRYGNQ8WXF5 182 aa13.11□□□□□ -0.31
MSH6-213ENST00000614496 E2F7Q96AV8 911 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms