RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 RAD23BP54727 409 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 UBASH3AP57075 661 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 BPIFB4P59827 614 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 CYP27A1Q02318 531 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 DLX2Q07687 328 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 NR1I3Q14994 352 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 VEPH1Q14D04 833 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 SYCP1Q15431 976 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 MEA1Q16626 185 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 ARHGAP17Q68EM7 881 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 IQCEQ6IPM2 695 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 DPY19L2P1Q6NXN4 242 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 TMEM270Q6UE05 265 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 SLC4A11Q8NBS3 891 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 MYLPFQ96A32 169 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 C8orf48Q96LL4 319 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 HEXIM2Q96MH2 286 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 KREMEN1Q96MU8 473 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 STK33Q9BYT3 514 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 DPEP3Q9H4B8 488 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 AVENQ9NQS1 362 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 TMLHEQ9NVH6 421 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 DNAJC12Q9UKB3 198 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 YIPF1Q9Y548 306 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 PCDHB4Q9Y5E5 795 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 REV3LO60673 3130 aa17.6■□□□□ 0.41
SHKBP1-219ENST00000599575 FGF19O95750 216 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 VDRP11473 427 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 ZNF132P52740 706 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 SLC8A3P57103 927 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 RBM10P98175 930 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 MGAT5BQ3V5L5 792 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 NEK11Q8NG66 645 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 ZNF707Q96C28 371 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 CYFIP2Q96F07 1278 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 SMARCD1Q96GM5 515 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 SPATA17Q96L03 361 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 ZNF512Q96ME7 567 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 TWNKQ96RR1 684 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 LSM14BQ9BX40 385 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 NAA15Q9BXJ9 866 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 EDEM3Q9BZQ6 932 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 PNPLA8Q9NP80 782 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 HMGXB4Q9UGU5 601 aa17.59■□□□□ 0.41
SHKBP1-219ENST00000599575 HCRTO43612 131 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 RFPL2O75678 378 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 PTPN2P17706 415 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 MRPS5P82675 430 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 SGO2Q562F6 1265 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 FIGNQ5HY92 759 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 RARS2Q5T160 578 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 TMC5Q6UXY8 1006 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 FUKQ8N0W3 1084 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 RBBP8NLQ8NC74 664 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 SUSD6Q92537 303 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 SMG7Q92540 1137 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 PCMTD1Q96MG8 357 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 SEPT5Q99719 369 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 NUP58Q9BVL2 599 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 B3GNT5Q9BYG0 378 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 PIDD1Q9HB75 910 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 CSNK1G1Q9HCP0 422 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 MYO6Q9UM54 1294 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 SLC27A5Q9Y2P5 690 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 COL6A3P12111 3177 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 EYSQ5T1H1 3165 aa17.58■□□□□ 0.4
SHKBP1-219ENST00000599575 XIRP2A4UGR9 3374 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 H3BQ06 376 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 MED7O43513 233 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 MICAL2O94851 1124 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 CSH1P0DML2 217 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 CSH2P0DML3 217 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 BDNFP23560 247 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 CYP2F1P24903 491 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 ANXA13P27216 316 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 TWF1Q12792 350 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 ZNF394Q53GI3 561 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 SARM1Q6SZW1 724 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 FAM35AQ86V20 835 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 FAM71AQ8IYT1 594 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 RNF214Q8ND24 703 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 SLC2A14Q8TDB8 520 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 KAT5Q92993 513 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 PSMG2Q969U7 264 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 NAP1L5Q96NT1 182 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 MED10Q9BTT4 135 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 UBXN6Q9BZV1 441 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 GANQ9H2C0 597 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 CRISPLD1Q9H336 500 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 DMAP1Q9NPF5 467 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 FAM207AQ9NSI2 230 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 COMMD8Q9NX08 183 aa17.57■□□□□ 0.4
SHKBP1-219ENST00000599575 ZNF197O14709 1029 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 TEX33O43247 280 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 MBTPS2O43462 519 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 NOL4O94818 638 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 FAM200BP0CF97 657 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 KRT5P13647 590 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 GRIK1P39086 918 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 EPHA5P54756 1037 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms