RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CREMQ03060 361 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 TSR1Q2NL82 804 aaKnown RBP17.61■□□□□ 0.41
VPS4A-202ENST00000562754 GOLGA7BQ2TAP0 167 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 FAM35AQ86V20 835 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 DCP1BQ8IZD4 617 aaKnown RBP17.61■□□□□ 0.41
VPS4A-202ENST00000562754 SLC2A14Q8TDB8 520 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 CYFIP2Q96F07 1278 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 HNRNPABQ99729 332 aaKnown RBP17.61■□□□□ 0.41
VPS4A-202ENST00000562754 RHOBTB2Q9BYZ6 727 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 ZNF518BQ9C0D4 1074 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 DNAI2Q9GZS0 605 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 ZNF576Q9H609 170 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 ZNHIT6Q9NWK9 470 aaKnown RBP17.61■□□□□ 0.41
VPS4A-202ENST00000562754 TSPAN16Q9UKR8 245 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 SSX2IPQ9Y2D8 614 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 PATJQ8NI35 1801 aa17.61■□□□□ 0.41
VPS4A-202ENST00000562754 MYH10P35580 1976 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 LAMA3Q16787 3333 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 MTMR11A4FU01 709 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 MICAL2O94851 1124 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 PTMAP06454 111 aaKnown RBP17.6■□□□□ 0.41
VPS4A-202ENST00000562754 EIF4A3P38919 411 aaKnown RBP17.6■□□□□ 0.41
VPS4A-202ENST00000562754 NDUFV1P49821 464 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 GPR17Q13304 367 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 MAPK8IP2Q13387 824 aaPredicted RBP17.6■□□□□ 0.41
VPS4A-202ENST00000562754 CNGA2Q16280 664 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 DENND1BQ6P3S1 775 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 LCLAT1Q6UWP7 414 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 RNF19BQ6ZMZ0 732 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 TTC30AQ86WT1 665 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 ZNF677Q86XU0 584 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 PALB2Q86YC2 1186 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 MRPL43Q8N983 215 aaKnown RBP17.6■□□□□ 0.41
VPS4A-202ENST00000562754 PGLYRP2Q96PD5 576 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 KLHL5Q96PQ7 755 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 PCDHB18PQ96TA0 734 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 AGPAT1Q99943 283 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 LMAN2LQ9H0V9 348 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 TTYH1Q9H313 450 aaPredicted RBP17.6■□□□□ 0.41
VPS4A-202ENST00000562754 NGRNQ9NPE2 291 aaKnown RBP17.6■□□□□ 0.41
VPS4A-202ENST00000562754 TMEM30AQ9NV96 361 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 PCDHGC3Q9UN70 934 aa17.6■□□□□ 0.41
VPS4A-202ENST00000562754 TMEM265A0A087WTH1 108 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 M0QYV0 167 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 DDX3XO00571 662 aaKnown RBP eCLIP17.59■□□□□ 0.41
VPS4A-202ENST00000562754 MED7O43513 233 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 CACNA2D1P54289 1103 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 CYP27A1Q02318 531 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 RAB33AQ14088 237 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 STILQ15468 1287 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 MAPRE1Q15691 268 aaKnown RBP17.59■□□□□ 0.41
VPS4A-202ENST00000562754 ASTE1Q2TB18 679 aaPredicted RBP17.59■□□□□ 0.41
VPS4A-202ENST00000562754 PKDCCQ504Y2 493 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 PASD1Q8IV76 773 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 LRRC8AQ8IWT6 810 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 TTC9BQ8N6N2 239 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 BAG1Q99933 345 aaPredicted RBP17.59■□□□□ 0.41
VPS4A-202ENST00000562754 MED10Q9BTT4 135 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 CRISPLD1Q9H336 500 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 KRT82Q9NSB4 513 aa17.59■□□□□ 0.41
VPS4A-202ENST00000562754 ABI2Q9NYB9 513 aaPredicted RBP17.59■□□□□ 0.41
VPS4A-202ENST00000562754 BZW2Q9Y6E2 419 aaKnown RBP17.59■□□□□ 0.41
VPS4A-202ENST00000562754 SSU72P8A0A1W2PR75 194 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 SOWAHDA6NJG2 315 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 ABLIM3O94929 683 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 CCZ1BP86790 482 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 CCZ1P86791 482 aaPredicted RBP17.58■□□□□ 0.4
VPS4A-202ENST00000562754 NFE2Q16621 373 aaPredicted RBP17.58■□□□□ 0.4
VPS4A-202ENST00000562754 PDE12Q6L8Q7 609 aaKnown RBP17.58■□□□□ 0.4
VPS4A-202ENST00000562754 CYP26C1Q6V0L0 522 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 C4orf50Q6ZRC1 276 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 SPATA2LQ8IUW3 424 aaPredicted RBP17.58■□□□□ 0.4
VPS4A-202ENST00000562754 ATAD1Q8NBU5 361 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 SLC30A5Q8TAD4 765 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 UBA3Q8TBC4 463 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 MICAL1Q8TDZ2 1067 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 LRCH3Q96II8 777 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 KCNF1Q9H3M0 494 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 NHEJ1Q9H9Q4 299 aaPredicted RBP17.58■□□□□ 0.4
VPS4A-202ENST00000562754 PCDHB5Q9Y5E4 795 aa17.58■□□□□ 0.4
VPS4A-202ENST00000562754 ATP8B3O60423 1300 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 FAM170AA1A519 330 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 CYP1A1P04798 512 aaPredicted RBP17.57■□□□□ 0.4
VPS4A-202ENST00000562754 ADH1AP07327 375 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 TNFAIP3P21580 790 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 BDNFP23560 247 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 CYP2F1P24903 491 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 NOMO3P69849 1222 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 SMARCB1Q12824 385 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 BMS1Q14692 1282 aaKnown RBP17.57■□□□□ 0.4
VPS4A-202ENST00000562754 MTF1Q14872 753 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 CFAP221Q4G0U5 840 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 RAD9BQ6WBX8 426 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 ADGRD2Q7Z7M1 963 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 TMTC1Q8IUR5 882 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 ANKRD52Q8NB46 1076 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 ZMIZ2Q8NF64 920 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 SMARCD1Q96GM5 515 aa17.57■□□□□ 0.4
VPS4A-202ENST00000562754 FUBP3Q96I24 572 aaKnown RBP eCLIP17.57■□□□□ 0.4
VPS4A-202ENST00000562754 SMOQ99835 787 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms