RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TRIM68Q6AZZ1 485 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 SCN4BQ8IWT1 228 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 USP13Q92995 863 aaPredicted RBP19■□□□□ 0.63
HDDC3-205ENST00000559898 CHFRQ96EP1 664 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 MMS19Q96T76 1030 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 XYLT2Q9H1B5 865 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 KCTD10Q9H3F6 313 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 LMAN1LQ9HAT1 526 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 TRPV5Q9NQA5 729 aa19■□□□□ 0.63
HDDC3-205ENST00000559898 OTOL1A6NHN0 477 aaPredicted RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 LRRIQ3A6PVS8 624 aaPredicted RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 CHRNB1P11230 501 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 WARSP23381 471 aaKnown RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 BDNFP23560 247 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 CDC25CP30307 473 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 LHX1P48742 406 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 USP46P62068 366 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 SMARCB1Q12824 385 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 MYO1EQ12965 1108 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 SURF1Q15526 300 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 TAF12Q16514 161 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 NFE2Q16621 373 aaPredicted RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 ARHGAP15Q53QZ3 475 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 TDRD10Q5VZ19 366 aaKnown RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 NAIF1Q69YI7 327 aaPredicted RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 SPATA2LQ8IUW3 424 aaPredicted RBP18.99■□□□□ 0.63
HDDC3-205ENST00000559898 C12orf56Q8IXR9 622 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 YAF2Q8IY57 180 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 CMTM8Q8IZV2 173 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 CYP2S1Q96SQ9 504 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 KIAA1586Q9HCI6 787 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 DMAC2Q9NW81 257 aa18.99■□□□□ 0.63
HDDC3-205ENST00000559898 LAMTOR5O43504 91 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 EXOC3O60645 756 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 NOL4O94818 638 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 VNN1O95497 513 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 PDIA4P13667 645 aaKnown RBP18.98■□□□□ 0.63
HDDC3-205ENST00000559898 RPS9P46781 194 aaKnown RBP18.98■□□□□ 0.63
HDDC3-205ENST00000559898 RAP1GAPP47736 663 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 CDH8P55286 799 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 MDH1BQ5I0G3 518 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 Q6ZS52 159 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 DCLK2Q8N568 766 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 BPIFB1Q8TDL5 484 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 FNBP1Q96RU3 617 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 SDCBP2Q9H190 292 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 SMYD3Q9H7B4 428 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 HPS4Q9NQG7 708 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 EXOC1Q9NV70 894 aa18.98■□□□□ 0.63
HDDC3-205ENST00000559898 HELZP42694 1942 aaKnown RBP18.98■□□□□ 0.63
HDDC3-205ENST00000559898 ATG2BQ96BY7 2078 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 C2orf78A6NCI8 922 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 SPECC1L-ADORA2AF8WAN1 911 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 DPYSL4O14531 572 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 FGF19O95750 216 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 CSH1P0DML2 217 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 CSH2P0DML3 217 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 TDGF1P13385 188 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 KRT85P78386 507 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 PON2Q15165 354 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 WDR72Q3MJ13 1102 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 CFAP221Q4G0U5 840 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 C1orf220Q5T0J3 134 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 HS2ST1Q7LGA3 356 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 CSGALNACT1Q8TDX6 532 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 PARD3BQ8TEW8 1205 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 PCED1BQ96HM7 432 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 CHRDQ9H2X0 955 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 ABCB6Q9NP58 842 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 PRMT8Q9NR22 394 aaPredicted RBP18.97■□□□□ 0.63
HDDC3-205ENST00000559898 GKN1Q9NS71 199 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 NXF1Q9UBU9 619 aaKnown RBP18.97■□□□□ 0.63
HDDC3-205ENST00000559898 CDH9Q9ULB4 789 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 MAPK8IP1Q9UQF2 711 aa18.97■□□□□ 0.63
HDDC3-205ENST00000559898 RIF1Q5UIP0 2472 aaKnown RBP18.97■□□□□ 0.63
HDDC3-205ENST00000559898 FAM186AA6NE01 2351 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 FAM237AA0A1B0GTK4 181 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 CLDN5O00501 218 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 MAN2B1O00754 1011 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 C4BPAP04003 597 aaKnown RBP18.96■□□□□ 0.63
HDDC3-205ENST00000559898 RPN1P04843 607 aaKnown RBP18.96■□□□□ 0.63
HDDC3-205ENST00000559898 ARSAP15289 507 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 PCSK1P29120 753 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 WEE1P30291 646 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 CTHP32929 405 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 KPNA1P52294 538 aaPredicted RBP18.96■□□□□ 0.63
HDDC3-205ENST00000559898 SATB1Q01826 763 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 CYP27A1Q02318 531 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 DMWDQ09019 674 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 SCARA5Q6ZMJ2 495 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 DPH6Q7L8W6 267 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 FSIP1Q8NA03 581 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 OR6B3Q8NGW1 331 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 E2F7Q96AV8 911 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 GCNAQ96QF7 691 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 NELL2Q99435 816 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 TRPC7Q9HCX4 862 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.96■□□□□ 0.631e-56■■■■■ 327
HDDC3-205ENST00000559898 OBP2AQ9NY56 170 aa18.96■□□□□ 0.63
HDDC3-205ENST00000559898 MAGEC2Q9UBF1 373 aaPredicted RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms