RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TLL2Q9Y6L7 1015 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 WASF2Q9Y6W5 498 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 PDXKO00764 312 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 ZNF189O75820 626 aaPredicted RBP11.43□□□□□ -0.58
USP3-206ENST00000558157 ABCB4P21439 1286 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 RFX1P22670 979 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 CHKAP35790 457 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 GJA8P48165 433 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 ACTR3P61158 418 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 SPIDRQ14159 915 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 KBTBD12Q3ZCT8 623 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 CEP55Q53EZ4 464 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 SLC44A4Q53GD3 710 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 ARHGEF16Q5VV41 709 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 PCNX4Q63HM2 1172 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 NCCRP1Q6ZVX7 275 aaPredicted RBP11.43□□□□□ -0.58
USP3-206ENST00000558157 CCDC80Q76M96 950 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 PDSS2Q86YH6 399 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 CROCCP3Q8IVE0 287 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 OR6Y1Q8NGX8 325 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 C17orf50Q8WW18 174 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 CD101Q93033 1021 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 SKA1Q96BD8 255 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 ARHGEF26Q96DR7 871 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 PDCD2LQ9BRP1 358 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 YIPF2Q9BWQ6 316 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 TRIM55Q9BYV6 548 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 TRABDQ9H4I3 376 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 ARL8BQ9NVJ2 186 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 PLK2Q9NYY3 685 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 FBXO40Q9UH90 709 aa11.43□□□□□ -0.58
USP3-206ENST00000558157 TBX3O15119 743 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 LGR5O75473 907 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 CSDE1O75534 798 aaKnown RBP11.42□□□□□ -0.58
USP3-206ENST00000558157 SLC10A3P09131 477 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 UQCRBP14927 111 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 ZNF24P17028 368 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 TNFAIP3P21580 790 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 IVDP26440 423 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 RPL5P46777 297 aaKnown RBP11.42□□□□□ -0.58
USP3-206ENST00000558157 MRPS9P82933 396 aaKnown RBP11.42□□□□□ -0.58
USP3-206ENST00000558157 PPP2R5CQ13362 524 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 TMED2Q15363 201 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 OLFML2BQ68BL8 750 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 SLFN12Q8IYM2 578 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 NUP93Q8N1F7 819 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 GTF3C2Q8WUA4 911 aaPredicted RBP11.42□□□□□ -0.58
USP3-206ENST00000558157 KRT35Q92764 455 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 VTI1AQ96AJ9 217 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 CCDC97Q96F63 343 aaPredicted RBP11.42□□□□□ -0.58
USP3-206ENST00000558157 MXRA8Q9BRK3 442 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 THAP2Q9H0W7 228 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 NPHS2Q9NP85 383 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 THEGQ9P2T0 379 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 COG5Q9UP83 839 aa11.42□□□□□ -0.58
USP3-206ENST00000558157 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 ARHGAP10A1A4S6 786 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 CFAP69A5D8W1 941 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 SLC25A27O95847 323 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 MYCLP12524 364 aaPredicted RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 ATF2P15336 505 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 IRX4P78413 519 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 CDK16Q00536 496 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 P3H1Q32P28 736 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 DNAL1Q4LDG9 190 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 HERC4Q5GLZ8 1057 aaPredicted RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 LRRC6Q86X45 466 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 SPOCK2Q92563 424 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ZFRQ96KR1 1074 aaKnown RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 PRICKLE1Q96MT3 831 aaPredicted RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 BTBD9Q96Q07 612 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ANAPC5Q9UJX4 755 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ABT1Q9ULW3 272 aaKnown RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 PCDHA12Q9UN75 941 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 LRRC37A2A6NM11 1700 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 TESPA1A2RU30 521 aaPredicted RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 MEIS1O00470 390 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 FSCN2O14926 492 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 TYROBPO43914 113 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 IL1BP01584 269 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ARP10275 920 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 PYGMP11217 842 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ITGB5P18084 799 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 CHN2P52757 468 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ITGA8P53708 1063 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 CNTN2Q02246 1040 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 KNOP1Q1ED39 458 aaKnown RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 AADACL2Q6P093 401 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 BORAQ6PGQ7 559 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 C1orf228Q6PIY5 440 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 RINLQ6ZS11 566 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 KCNK18Q7Z418 384 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 RASSF3Q86WH2 238 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 ZBED8Q8IZ13 594 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 GAB3Q8WWW8 586 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 SLC35C1Q96A29 364 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 FAM20AQ96MK3 541 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 PARK7Q99497 189 aaKnown RBP11.41□□□□□ -0.58
USP3-206ENST00000558157 HEY2Q9UBP5 337 aa11.41□□□□□ -0.58
USP3-206ENST00000558157 POLIQ9UNA4 740 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms