RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CNR2P34972 360 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 ARHGAP8P85298 464 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 AMPD3Q01432 767 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 LMNB2Q03252 620 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 DMWDQ09019 674 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 RUNX3Q13761 415 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 SIM2Q14190 667 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 LAIR1Q6GTX8 287 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 CC2D1AQ6P1N0 951 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 DPH6Q7L8W6 267 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 MON1AQ86VX9 555 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 LONP2Q86WA8 852 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 OSTM1Q86WC4 334 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 SPATA2LQ8IUW3 424 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 GLIS3Q8NEA6 775 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 TRMT2BQ96GJ1 504 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 ZNF396Q96N95 335 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 PKMYT1Q99640 499 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 FAM83CQ9BQN1 747 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 CUEDC2Q9H467 287 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 EBF3Q9H4W6 596 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 PTPRDP23468 1912 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 MED19A0JLT2 244 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 GABRDO14764 452 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HRO43593 1189 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HCRTO43612 131 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 TGM1P22735 817 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 ASIC1P78348 528 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 AMPD2Q01433 879 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 SPEM2Q0P670 501 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 GRSF1Q12849 480 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 ZNF268Q14587 947 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 E2F4Q16254 413 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 DUOXA2Q1HG44 320 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 SOWAHAQ2M3V2 549 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 CFAP221Q4G0U5 840 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HEATR6Q6AI08 1181 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 TRIM68Q6AZZ1 485 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 C4orf50Q6ZRC1 276 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 CBWD2Q8IUF1 395 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 SCN4BQ8IWT1 228 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 FSIP1Q8NA03 581 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 OR5B17Q8NGF7 314 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HPS3Q969F9 1004 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 DHX58Q96C10 678 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 FUBP3Q96I24 572 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HPDLQ96IR7 371 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 MYRFLQ96LU7 910 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 BACH2Q9BYV9 841 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 TRIM9Q9C026 710 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 KIAA1586Q9HCI6 787 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 TRPC7Q9HCX4 862 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HPS4Q9NQG7 708 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 KBTBD4Q9NVX7 518 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 C2orf42Q9NWW7 574 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 HSPBP1Q9NZL4 362 aa11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 TFIP11Q9UBB9 837 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-213ENST00000557455 PTPRJQ12913 1337 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 SPAG17Q6Q759 2223 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 TRDMT1O14717 391 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 EIF3DO15371 548 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 CUTAO60888 179 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 TADA3O75528 432 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 RETP07949 1114 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 USP17L7P0C7H9 530 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 FAM160A1Q05DH4 1040 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 SRSF5Q13243 272 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 PDGFRLQ15198 375 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 CCDC142Q17RM4 750 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 TMEM196Q5HYL7 178 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 FAM171BQ6P995 826 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 WDR49Q8IV35 697 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 IQUBQ8NA54 791 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 TTC16Q8NEE8 873 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 ZNF507Q8TCN5 953 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 SYT15Q9BQS2 421 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 PARD6AQ9NPB6 346 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 MAGEC2Q9UBF1 373 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 CDV3Q9UKY7 258 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 CDH9Q9ULB4 789 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 MYO16Q9Y6X6 1858 aa11.86□□□□□ -0.51
CCDC88C-213ENST00000557455 EML5Q05BV3 1969 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 TRAV19A0A0A6YYK7 116 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 OTOL1A6NHN0 477 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 LRP3O75074 770 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 ATG13O75143 517 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 ATP2C2O75185 946 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 YEATS4O95619 227 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 CKMP06732 381 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 ARSAP15289 507 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 TNNI1P19237 187 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 LMO2P25791 158 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 HOXA6P31267 233 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 HOXD13P35453 343 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 GRIK1P39086 918 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 MAGEA11P43364 429 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 ATXN1P54253 815 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 PSMC1P62191 440 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 MTF1Q14872 753 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms