RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 BBS12Q6ZW61 710 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 SEPT12Q8IYM1 358 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 PPFIBP2Q8ND30 876 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 CPT1BQ92523 772 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 MCUR1Q96AQ8 359 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 ELMO3Q96BJ8 720 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 FAM136AQ96C01 138 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 CDHR1Q96JP9 859 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 TMEM121Q9BTD3 319 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 CYP26B1Q9NR63 512 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 KLHL11Q9NVR0 708 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 HEY2Q9UBP5 337 aa17.08■□□□□ 0.32
SHMT2-231ENST00000557433 ARID2Q68CP9 1835 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 DPPA5A6NC42 116 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF862O60290 1169 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 HSPA1LP34931 641 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 NLRP11P59045 1033 aaKnown RBP17.07■□□□□ 0.32
SHMT2-231ENST00000557433 MXRA7P84157 204 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 SLC18A2Q05940 514 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 HADHQ16836 314 aaKnown RBP17.07■□□□□ 0.32
SHMT2-231ENST00000557433 VPS52Q8N1B4 723 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 FNIP1Q8TF40 1166 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 RSAD2Q8WXG1 361 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 APOPT1Q96IL0 206 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 MCEEQ96PE7 176 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.07■□□□□ 0.326e-6■■□□□ 12.1
SHMT2-231ENST00000557433 NMRK1Q9NWW6 199 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 KANSL3Q9P2N6 904 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 STX18Q9P2W9 335 aaKnown RBP17.07■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF212Q9UDV6 495 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 PCDHGC3Q9UN70 934 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 AGTPBP1Q9UPW5 1226 aa17.07■□□□□ 0.32
SHMT2-231ENST00000557433 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 TESPA1A2RU30 521 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 F8W8V4 182 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 LPXNO60711 386 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 NEK3P51956 506 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 ZBTB16Q05516 673 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 PRKD1Q15139 912 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 KHDC1Q4VXA5 237 aaKnown RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 XKR3Q5GH77 459 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 VSIG10LQ86VR7 867 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 RHPN2Q8IUC4 686 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 ANKMY2Q8IV38 441 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 RFWD2Q8NHY2 731 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 STMN2Q93045 179 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 FRMD8Q9BZ67 464 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 NUB1Q9Y5A7 615 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 CTDP1Q9Y5B0 961 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 IKBKGQ9Y6K9 419 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 C3orf70A6NLC5 250 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 SIGLEC16A6NMB1 481 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 F8VP50 259 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 MMP10P09238 476 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 CDC25CP30307 473 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 POLR2BP30876 1174 aaKnown RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 NAMPTP43490 491 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 NCOA4Q13772 614 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 HP1BP3Q5SSJ5 553 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 SNX30Q5VWJ9 437 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 LMBRD2Q68DH5 695 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 RSBN1LQ6PCB5 846 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 CAPN12Q6ZSI9 719 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 CPXCR1Q8N123 301 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 FBXO36Q8NEA4 188 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 TSC22D3Q99576 134 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 ZNF341Q9BYN7 854 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 RAVER2Q9HCJ3 691 aaKnown RBP17.06■□□□□ 0.32
SHMT2-231ENST00000557433 SCOCQ9UIL1 159 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 DCTN4Q9UJW0 460 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 ASB3Q9Y575 518 aa17.06■□□□□ 0.32
SHMT2-231ENST00000557433 PSME4Q14997 1843 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 A0A0G2JND7 137 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 CLRN2A0PK11 232 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 CFAP69A5D8W1 941 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 H0Y3Z8 333 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 MAGEC1O60732 1142 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 PSMG1O95456 288 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 ESRRAP11474 423 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-231ENST00000557433 SSTR1P30872 391 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 ETV4P43268 484 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 RAP1GDS1P52306 607 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 AP1B1Q10567 949 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 RCN1Q15293 331 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 GSTA3Q16772 222 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 ACTL9Q8TC94 416 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 TRAPPC9Q96Q05 1148 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 CCDC28BQ9BUN5 200 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 GLIS2Q9BZE0 524 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-231ENST00000557433 YIPF3Q9GZM5 350 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 MAF1Q9H063 256 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 ARL8BQ9NVJ2 186 aa17.05■□□□□ 0.32
SHMT2-231ENST00000557433 SEPT9Q9UHD8 586 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-231ENST00000557433 PTPRJQ12913 1337 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 A0A0B4J269 797 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 STAM2O75886 525 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 ASS1P00966 412 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 DLDP09622 509 aaKnown RBP17.04■□□□□ 0.32
SHMT2-231ENST00000557433 TCF4P15884 667 aa17.04■□□□□ 0.32
SHMT2-231ENST00000557433 RPL22P35268 128 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms