RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 MAN1C1Q9NR34 630 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 FBXW11Q9UKB1 542 aa13.63□□□□□ -0.23
SHMT2-227ENST00000557269 BEST1O76090 585 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 PAEPP09466 180 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 CD19P15391 556 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 BDNFP23560 247 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 ADORA2BP29275 332 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 SOX5P35711 763 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 DLX2Q07687 328 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-227ENST00000557269 GOLGA8FQ08AF8 430 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 GOLGA8DPQ0D2H9 430 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 TBX2Q13207 712 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-227ENST00000557269 COL19A1Q14993 1142 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 NFE2Q16621 373 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-227ENST00000557269 CTC1Q2NKJ3 1217 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 FIGNQ5HY92 759 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 SDHAF4Q5VUM1 108 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 ARHGAP17Q68EM7 881 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 CACNA2D4Q7Z3S7 1137 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 TMC6Q7Z403 805 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 FAM35AQ86V20 835 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 PPFIBP1Q86W92 1011 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 SPATA2LQ8IUW3 424 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-227ENST00000557269 TCEAL8Q8IYN2 117 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 PPM1EQ8WY54 764 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 MRFAP1L1Q96HT8 127 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 SPAG5Q96R06 1193 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 HNRNPABQ99729 332 aaKnown RBP13.62□□□□□ -0.23
SHMT2-227ENST00000557269 CLEC1BQ9P126 229 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 CAPN11Q9UMQ6 739 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 DAAM1Q9Y4D1 1078 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 PCDHB5Q9Y5E4 795 aa13.62□□□□□ -0.23
SHMT2-227ENST00000557269 REV3LO60673 3130 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 A0A1W2PQJ5 194 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 LRRC53A6NM62 1247 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 O00370 1275 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 RFPL2O75678 378 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 C8AP07357 584 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 HAPLN1P10915 354 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-227ENST00000557269 VDRP11473 427 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 CASP14P31944 242 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 LTBRP36941 435 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 STAT1P42224 750 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 ARID5AQ03989 594 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 MAPRE1Q15691 268 aaKnown RBP13.61□□□□□ -0.23
SHMT2-227ENST00000557269 GOLGA7BQ2TAP0 167 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 CFAP221Q4G0U5 840 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 TMEM184AQ6ZMB5 413 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 C4orf50Q6ZRC1 276 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 C12orf76Q8N812 135 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-227ENST00000557269 STKLD1Q8NE28 680 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 SLC7A14Q8TBB6 771 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 GPR152Q8TDT2 470 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 PPP2R3CQ969Q6 453 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 KCNK16Q96T55 309 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 SEPT5Q99719 369 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-227ENST00000557269 SMOQ99835 787 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 MED10Q9BTT4 135 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 NUP58Q9BVL2 599 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 EDEM3Q9BZQ6 932 aa13.61□□□□□ -0.23
SHMT2-227ENST00000557269 PRRG1O14668 218 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 TBX10O75333 385 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 ZMYND10O75800 440 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 C1RP00736 705 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 CYP11B1P15538 503 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 ATF6P18850 670 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 GNA15P30679 374 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 ELF1P32519 619 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 SMARCB1Q12824 385 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 DDR2Q16832 855 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 MGAT5BQ3V5L5 792 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 SGO2Q562F6 1265 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 DENND1BQ6P3S1 775 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 SYCE2Q6PIF2 218 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 IRF2BP2Q7Z5L9 587 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 NOP9Q86U38 636 aaKnown RBP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 TTC30AQ86WT1 665 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 ZMIZ2Q8NF64 920 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 UBA3Q8TBC4 463 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 SPPL2BQ8TCT7 592 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 C2orf15Q8WU43 125 aaKnown RBP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 SLC20A1Q8WUM9 679 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 ZNF606Q8WXB4 792 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 DDX1Q92499 740 aaKnown RBP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 FUBP3Q96I24 572 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 ABCB6Q9NP58 842 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 KRT82Q9NSB4 513 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 CLDND1Q9NY35 253 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 CDH22Q9UJ99 828 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 NOCTQ9UK39 431 aaKnown RBP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 TSPAN16Q9UKR8 245 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 KIAA1257Q9ULG3 409 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 YIPF1Q9Y548 306 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.6□□□□□ -0.23
SHMT2-227ENST00000557269 INSL5Q9Y5Q6 135 aa13.6□□□□□ -0.23
SHMT2-227ENST00000557269 TULP2O00295 520 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 THAP12O43422 761 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 AP1G2O75843 785 aa13.59□□□□□ -0.23
SHMT2-227ENST00000557269 MICAL2O94851 1124 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms