RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 CRHR2Q13324 411 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 UBAP2Q5T6F2 1119 aaKnown RBP13.59□□□□□ -0.23
SHMT2-205ENST00000553474 DAB2IPQ5VWQ8 1189 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 SLC35B2Q8TB61 432 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 CKAP2Q8WWK9 683 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 KAT2BQ92831 832 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 FGD4Q96M96 766 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 INO80BQ9C086 356 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-205ENST00000553474 NKIRAS1Q9NYS0 192 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 KIAA1257Q9ULG3 409 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 PLXNB2O15031 1838 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 COL1A2P08123 1366 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 PCNTO95613 3336 aa13.59□□□□□ -0.23
SHMT2-205ENST00000553474 LRRD1A4D1F6 860 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 SNX3O60493 162 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 RASSF9O75901 435 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 HMGCRP04035 888 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 MARK3P27448 753 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 GJC1P36383 396 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 GABRB2P47870 512 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 VPS41P49754 854 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 XRCC4Q13426 336 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 EFCAB12Q6NXP0 572 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 BBS12Q6ZW61 710 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 CENPUQ71F23 418 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 LRRC71Q8N4P6 559 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 TFAP2BQ92481 460 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 MAGEB18Q96M61 343 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 MMP19Q99542 508 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 CDT1Q9H211 546 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 SLC24A2Q9UI40 661 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 CPA4Q9UI42 421 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 NAALADL1Q9UQQ1 740 aa13.58□□□□□ -0.23
SHMT2-205ENST00000553474 MCM3APO60318 1980 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 CEP350Q5VT06 3117 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 ALOX15BO15296 676 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 TRPA1O75762 1119 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 SUN1O94901 812 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 OAS1P00973 400 aaKnown RBP13.58□□□□□ -0.24
SHMT2-205ENST00000553474 KRT10P13645 584 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 TSHRP16473 764 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 PSMA2P25787 234 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 HNRNPH1P31943 449 aaKnown RBP13.58□□□□□ -0.24
SHMT2-205ENST00000553474 SCTRP47872 440 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 OGDHQ02218 1023 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 SLC25A11Q02978 314 aaKnown RBP13.58□□□□□ -0.24
SHMT2-205ENST00000553474 STILQ15468 1287 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 TMEM132AQ24JP5 1023 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 PTPN20Q4JDL3 420 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 ZC3H12AQ5D1E8 599 aaKnown RBP13.58□□□□□ -0.24
SHMT2-205ENST00000553474 RNASEH2BQ5TBB1 312 aaKnown RBP13.58□□□□□ -0.24
SHMT2-205ENST00000553474 WDR78Q5VTH9 848 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 KAZNQ674X7 775 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 EEPD1Q7L9B9 569 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 ZFYVE28Q9HCC9 887 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 TXNRD2Q9NNW7 524 aa13.58□□□□□ -0.24
SHMT2-205ENST00000553474 SMG5Q9UPR3 1016 aaKnown RBP13.58□□□□□ -0.24
SHMT2-205ENST00000553474 EXOC1LA0A1B0GW35 172 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 C3orf70A6NLC5 250 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-205ENST00000553474 PI4K2BG5E9Z4 385 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 PRPF4O43172 522 aaKnown RBP eCLIP13.57□□□□□ -0.241e-8■■■□□ 17.5
SHMT2-205ENST00000553474 LRCH4O75427 683 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 RNF8O76064 485 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 ALDH1A1P00352 501 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 TXNP10599 105 aaKnown RBP13.57□□□□□ -0.24
SHMT2-205ENST00000553474 CD19P15391 556 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 PHBP35232 272 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 PCK1P35558 622 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 RAD23BP54727 409 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 GPS1Q13098 491 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 LAMC2Q13753 1193 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 ATP13A4Q4VNC1 1196 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 CCDC38Q502W7 563 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 ZNF394Q53GI3 561 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 TRPM8Q7Z2W7 1104 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 REM2Q8IYK8 340 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-205ENST00000553474 NLRP4Q96MN2 994 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 NCAPGQ9BPX3 1015 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 SSU72Q9NP77 194 aaKnown RBP13.57□□□□□ -0.24
SHMT2-205ENST00000553474 KCNK9Q9NPC2 374 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 RBPJLQ9UBG7 517 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 SLC12A4Q9UP95 1085 aa13.57□□□□□ -0.24
SHMT2-205ENST00000553474 USP15Q9Y4E8 981 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-205ENST00000553474 CFAP73A6NFT4 308 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 FAM47DPA6NHR8 397 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 RASA4BC9J798 803 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 DNM1LO00429 736 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 RASA4O43374 803 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 CILPO75339 1184 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 C22orf31O95567 290 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 VDRP11473 427 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 SSTR3P32745 418 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-205ENST00000553474 STX2P32856 288 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 RFC1P35251 1148 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-205ENST00000553474 GCLCP48506 637 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-205ENST00000553474 PSMC1P62191 440 aaKnown RBP13.56□□□□□ -0.24
SHMT2-205ENST00000553474 IL9RQ01113 521 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 PTPN11Q06124 597 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-205ENST00000553474 CBLBQ13191 982 aa13.56□□□□□ -0.24
SHMT2-205ENST00000553474 WDR72Q3MJ13 1102 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms