RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 S1PR5Q9H228 398 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 THEGQ9P2T0 379 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 DNAJC12Q9UKB3 198 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 ASB3Q9Y575 518 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 NME7Q9Y5B8 376 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 INSL5Q9Y5Q6 135 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 TSC2P49815 1807 aa14.64□□□□□ -0.07
PTCH1-213ENST00000546820 A0A1B0GTH6 734 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 CBFA2T2O43439 604 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 POU2F2P09086 479 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 VDRP11473 427 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 KRT5P13647 590 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 UCHL3P15374 230 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 PTPN2P17706 415 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 ACO1P21399 889 aaKnown RBP14.63□□□□□ -0.07
PTCH1-213ENST00000546820 BDNFP23560 247 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 CYP2F1P24903 491 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 GRIK1P39086 918 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 USP8P40818 1118 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 MTHFRP42898 656 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 TWF1Q12792 350 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 CLUL1Q15846 466 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 TAF12Q16514 161 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 ITIH5Q86UX2 942 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 SCN4BQ8IWT1 228 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 C12orf29Q8N999 325 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 SLC4A11Q8NBS3 891 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 ATXN2LQ8WWM7 1075 aaKnown RBP14.63□□□□□ -0.07
PTCH1-213ENST00000546820 SMG7Q92540 1137 aaKnown RBP14.63□□□□□ -0.07
PTCH1-213ENST00000546820 KAT5Q92993 513 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 MYLPFQ96A32 169 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 CEP295NLQ96MC4 621 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 KREMEN1Q96MU8 473 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 NAP1L5Q96NT1 182 aaPredicted RBP14.63□□□□□ -0.07
PTCH1-213ENST00000546820 NECTIN4Q96NY8 510 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 APOL5Q9BWW9 433 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 B3GNT5Q9BYG0 378 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 STK33Q9BYT3 514 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 SIX2Q9NPC8 291 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 FAM207AQ9NSI2 230 aaPredicted RBP14.63□□□□□ -0.07
PTCH1-213ENST00000546820 YIPF1Q9Y548 306 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 PLXNA3P51805 1871 aa14.63□□□□□ -0.07
PTCH1-213ENST00000546820 A0A1W2PQC6 194 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 TRIM66O15016 1216 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 TEX33O43247 280 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 PAPLNO95428 1278 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 VNN2O95498 520 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 CD19P15391 556 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 ANXA13P27216 316 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 CDR1P51861 262 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 SLC8A3P57103 927 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 BPIFB4P59827 614 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 MRPS5P82675 430 aaKnown RBP14.62□□□□□ -0.07
PTCH1-213ENST00000546820 ORC1Q13415 861 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 SMAD4Q13485 552 aaKnown RBP14.62□□□□□ -0.07
PTCH1-213ENST00000546820 RAPGEF1Q13905 1077 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 STILQ15468 1287 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 SGO2Q562F6 1265 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 GJB7Q6PEY0 223 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 UBR7Q8N806 425 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 RBBP8NLQ8NC74 664 aaPredicted RBP14.62□□□□□ -0.07
PTCH1-213ENST00000546820 SMRP1Q8NCR6 262 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 TWNKQ96RR1 684 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 HNRNPABQ99729 332 aaKnown RBP14.62□□□□□ -0.07
PTCH1-213ENST00000546820 LPIN3Q9BQK8 851 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 FAM49BQ9NUQ9 324 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 EHD2Q9NZN4 543 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 HMGXB4Q9UGU5 601 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 CNTN6Q9UQ52 1028 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 SIK3Q9Y2K2 1263 aa14.62□□□□□ -0.07
PTCH1-213ENST00000546820 CLDN5O00501 218 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CCL16O15467 120 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 FAM200BP0CF97 657 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CSH1P0DML2 217 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CSH2P0DML3 217 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 POLR2FP61218 127 aaKnown RBP14.61□□□□□ -0.07
PTCH1-213ENST00000546820 APBA1Q02410 837 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 PTK2Q05397 1052 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 DRAP1Q14919 205 aaPredicted RBP14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CYP4A22Q5TCH4 519 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 ARHGAP17Q68EM7 881 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 PTCRAQ6ISU1 281 aaPredicted RBP14.61□□□□□ -0.07
PTCH1-213ENST00000546820 DPY19L2P1Q6NXN4 242 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CACNA2D4Q7Z3S7 1137 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 LEMD2Q8NC56 503 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.61□□□□□ -0.07
PTCH1-213ENST00000546820 SLC2A14Q8TDB8 520 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 SMARCD1Q96GM5 515 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 SPAG5Q96R06 1193 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CRISPLD1Q9H336 500 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 PRDM6Q9NQX0 595 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 IFNKQ9P0W0 207 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 HESX1Q9UBX0 185 aa14.61□□□□□ -0.07
PTCH1-213ENST00000546820 CDH23Q9H251 3354 aa14.6□□□□□ -0.07
PTCH1-213ENST00000546820 RNF225M0QZC1 329 aaPredicted RBP14.6□□□□□ -0.07
PTCH1-213ENST00000546820 FOXN3O00409 490 aaPredicted RBP14.6□□□□□ -0.07
PTCH1-213ENST00000546820 ZNF197O14709 1029 aa14.6□□□□□ -0.07
PTCH1-213ENST00000546820 MBTPS2O43462 519 aa14.6□□□□□ -0.07
PTCH1-213ENST00000546820 MED7O43513 233 aa14.6□□□□□ -0.07
PTCH1-213ENST00000546820 AP1G2O75843 785 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms