RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 FAM172AQ8WUF8 416 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 GRAMD1AQ96CP6 724 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 ASCC2Q9H1I8 757 aaPredicted RBP16.38■□□□□ 0.21
CUX1-211ENST00000546411 PORCNQ9H237 461 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 NINJ2Q9NZG7 142 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 DFFAO00273 331 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 RFC1P35251 1148 aaPredicted RBP16.38■□□□□ 0.21
CUX1-211ENST00000546411 GNL1P36915 607 aaPredicted RBP16.38■□□□□ 0.21
CUX1-211ENST00000546411 SLC12A1Q13621 1099 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 SCUBE3Q8IX30 993 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 LRRC57Q8N9N7 239 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 TRPM4Q8TD43 1214 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 FSD1LQ9BXM9 530 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 PHTF1Q9UMS5 762 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 PCDHA2Q9Y5H9 948 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 H3BRB1 525 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 CHKAP35790 457 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 GEMIN4P57678 1058 aaKnown RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 C1QBPQ07021 282 aaKnown RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 DRP2Q13474 957 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 C1orf146Q5VVC0 180 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 DUPD1Q68J44 220 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 TUT1Q9H6E5 874 aaKnown RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.37■□□□□ 0.21
CUX1-211ENST00000546411 SPECC1L-ADORA2AF8WAN1 911 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 B4GALT5O43286 388 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 BNIP3LO60238 219 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 NPM3O75607 178 aaKnown RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 PTGER2P43116 358 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 HSD17B4P51659 736 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 NDST1P52848 882 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 TAS2R40P59535 323 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 SKOR1P84550 965 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 GRAMD1BQ3KR37 738 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 ZACNQ401N2 412 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 SLC7A14Q8TBB6 771 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 ZNF560Q96MR9 790 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 HAO1Q9UJM8 370 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 ABT1Q9ULW3 272 aaKnown RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 CFAP73A6NFT4 308 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 BANF1O75531 89 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 AKAP5P24588 427 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 TGFB2P61812 414 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 MAMLD1Q13495 774 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 LAMC2Q13753 1193 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 BMPR2Q13873 1038 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 ARID3BQ8IVW6 561 aaPredicted RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 BRSK2Q8IWQ3 736 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 WNK4Q96J92 1243 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 SIX2Q9NPC8 291 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 HES2Q9Y543 173 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 H3BRJ5 948 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 TPI1P60174 286 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 CAPSQ13938 189 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 FAM182AQ5T1J6 154 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 OR6P1Q8NGX9 317 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 PPWD1Q96BP3 646 aaKnown RBP16.37■□□□□ 0.21
CUX1-211ENST00000546411 TMEM176AQ96HP8 235 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 APOL2Q9BQE5 337 aa16.37■□□□□ 0.21
CUX1-211ENST00000546411 ZNF142P52746 1687 aaPredicted RBP16.36■□□□□ 0.21
CUX1-211ENST00000546411 PLIN4Q96Q06 1357 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 TRAPPC3O43617 180 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 COPS2P61201 443 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 PLCB4Q15147 1175 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 PKN2Q16513 984 aaKnown RBP16.36■□□□□ 0.21
CUX1-211ENST00000546411 LRRC6Q86X45 466 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 DNERQ8NFT8 737 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 PAFAH2Q99487 392 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 PAK5Q9P286 719 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 HOXD13P35453 343 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 CASP2P42575 452 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 DEUP1Q05D60 604 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 LRRC36Q1X8D7 754 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 DENND1BQ6P3S1 775 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 FOXR2Q6PJQ5 311 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 OPTNQ96CV9 577 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 SPON1Q9HCB6 807 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 TSPAN16Q9UKR8 245 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 R3HDM2Q9Y2K5 976 aaKnown RBP16.36■□□□□ 0.21
CUX1-211ENST00000546411 LOC100653049A0A140TA62 436 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 LACTBL1A8MY62 500 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 TNPO2O14787 897 aaKnown RBP16.36■□□□□ 0.21
CUX1-211ENST00000546411 KRT34O76011 436 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 VCPP55072 806 aaKnown RBP16.36■□□□□ 0.21
CUX1-211ENST00000546411 EEF1DP3Q658K8 133 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 LONP2Q86WA8 852 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 RASSF3Q86WH2 238 aa16.36■□□□□ 0.21
CUX1-211ENST00000546411 FHDC1Q9C0D6 1143 aaPredicted RBP16.36■□□□□ 0.21
CUX1-211ENST00000546411 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.36■□□□□ 0.218e-7■■■□□ 15.9
CUX1-211ENST00000546411 UMODL1Q5DID0 1318 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 NEMP1O14524 444 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 GMNNO75496 209 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 HIRAP54198 1017 aaPredicted RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 TTC39CQ8N584 583 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 PDCD6IPQ8WUM4 868 aaKnown RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 SNTG2Q9NY99 539 aa16.35■□□□□ 0.21
CUX1-211ENST00000546411 CPSF3Q9UKF6 684 aaKnown RBP16.35■□□□□ 0.21
CUX1-211ENST00000546411 TIMM13Q9Y5L4 95 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms