RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TMEM110-MUSTN1A8MSY1 372 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 DDX3YO15523 660 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 PEX1O43933 1283 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CBFA2T3O75081 653 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PLEKHA8P1O95397 391 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ALDH2P05091 517 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PORP16435 677 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 CDC25CP30307 473 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CIITAP33076 1130 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 STAT3P40763 770 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 UBA7P41226 1012 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 IRX4P78413 519 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 IFI35P80217 286 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 FKBP3Q00688 224 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 DSG1Q02413 1049 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 KLHL30Q0D2K2 578 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 AP3B2Q13367 1082 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 STAT4Q14765 748 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ZNF174Q15697 407 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CCDC6Q16204 474 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 BCL2A1Q16548 175 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CLEC16AQ2KHT3 1053 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PDCD4Q53EL6 469 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 TMEM164Q5U3C3 297 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 NET1Q7Z628 596 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 TMEM110Q86TL2 294 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 TMEM126BQ8IUX1 230 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 TRIM59Q8IWR1 403 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 SCFD1Q8WVM8 642 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 C10orf82Q8WW14 230 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ARHGEF2Q92974 986 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 TTC25Q96NG3 672 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PSMB7Q99436 277 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 BTBD10Q9BSF8 475 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 AMNQ9BXJ7 453 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 POLD4Q9HCU8 107 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 POLIQ9UNA4 740 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CHKBQ9Y259 395 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 N6AMT1Q9Y5N5 214 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CEP350Q5VT06 3117 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 A0A087X0T9 212 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 EDF1O60869 148 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 PFDN1O60925 122 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 COBLO75128 1261 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CDH16O75309 829 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 INMTO95050 263 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 TGDSO95455 350 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 H2AFZP0C0S5 128 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 FAM228BP0C875 321 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 SCG2P13521 617 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 HOXD10P28358 340 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 HOXC8P31273 242 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 STIP1P31948 543 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 STX2P32856 288 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 MNX1P50219 401 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 OXCT1P55809 520 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 USP46P62068 366 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CDR2Q01850 454 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 USP4Q13107 963 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 NONOQ15233 471 aaKnown RBP eCLIP5.53□□□□□ -1.52
USP28-213ENST00000544967 TBCCQ15814 346 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 PDK4Q16654 411 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 TRMT5Q32P41 509 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 EDRF1Q3B7T1 1238 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.53□□□□□ -1.52
USP28-213ENST00000544967 EARS2Q5JPH6 523 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 ZNF449Q6P9G9 518 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 B3GNT6Q6ZMB0 384 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 NCCRP1Q6ZVX7 275 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 KCTD1Q719H9 257 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 H2AFVQ71UI9 128 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 DDX42Q86XP3 938 aaKnown RBP eCLIP5.53□□□□□ -1.52
USP28-213ENST00000544967 MCF2L2Q86YR7 1114 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 KIAA0895Q8NCT3 520 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 BBOF1Q8ND07 529 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 UCMAQ8WVF2 138 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 RFFLQ8WZ73 363 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 HAUS1Q96CS2 278 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CGREF1Q99674 301 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ZKSCAN3Q9BRR0 538 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 DCAF16Q9NXF7 216 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 HSFX1Q9UBD0 423 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 NAGPAQ9UK23 515 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ZMIZ1Q9ULJ6 1067 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 STX8Q9UNK0 236 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 TMEM98Q9Y2Y6 226 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 A0A0J9YVX5 310 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 SOWAHBA6NEL2 793 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 BACH1O14867 736 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 ZNF865P0CJ78 1059 aaPredicted RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 BPIFB4P59827 614 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 MPP3Q13368 585 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 DCTN2Q13561 401 aaKnown RBP5.53□□□□□ -1.52
USP28-213ENST00000544967 SNX17Q15036 470 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 CTC1Q2NKJ3 1217 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 WDR72Q3MJ13 1102 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 KIAA1614Q5VZ46 1190 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 RHBDF2Q6PJF5 856 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 B3GNT9Q6UX72 402 aa5.53□□□□□ -1.52
USP28-213ENST00000544967 KYAT3Q6YP21 454 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms