RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 C12orf60Q5U649 245 aa16.04■□□□□ 0.16
CHD4-210ENST00000544040 RSBN1Q5VWQ0 802 aaPredicted RBP16.04■□□□□ 0.16
CHD4-210ENST00000544040 LRRC8DQ7L1W4 858 aa16.04■□□□□ 0.16
CHD4-210ENST00000544040 EIF3LQ9Y262 564 aaKnown RBP16.04■□□□□ 0.16
CHD4-210ENST00000544040 PALLDQ8WX93 1383 aa16.04■□□□□ 0.16
CHD4-210ENST00000544040 VWA5AO00534 786 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 KLRC1P26715 233 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 ORC1Q13415 861 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 BFSP2Q13515 415 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 KPNB1Q14974 876 aaKnown RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 ILKAPQ9H0C8 392 aaPredicted RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 ATP7AQ04656 1500 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 NR5A2O00482 541 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 ZNF682O95780 498 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 RBP3P10745 1247 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 NCAM1P13591 858 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 USP39Q53GS9 565 aaKnown RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 ATG4AQ8WYN0 398 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 C7orf25Q9BPX7 421 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 CATSPERBQ9H7T0 1116 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 RSAD1Q9HA92 442 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 ZNF189O75820 626 aaPredicted RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 SCTRP47872 440 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 MTMR2Q13614 643 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 TFB1MQ8WVM0 346 aaKnown RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 PIPSLA2A3N6 862 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 PSMC6P62333 389 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 MTFR1Q15390 333 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 ERAP2Q6P179 960 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 TRIM65Q6PJ69 517 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 DDI1Q8WTU0 396 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 SPAG6O75602 509 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 GSTM1P09488 218 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 CENPCQ03188 943 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 AMHR2Q16671 573 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 RIBC1Q8N443 379 aaPredicted RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 C19orf18Q8NEA5 215 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 BLOC1S5Q8TDH9 187 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 USP13Q92995 863 aaPredicted RBP16.03■□□□□ 0.16
CHD4-210ENST00000544040 HDHD2Q9H0R4 259 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 CRLS1Q9UJA2 301 aa16.03■□□□□ 0.16
CHD4-210ENST00000544040 E9PBE3 544 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 TRIM13O60858 407 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 PLEKP08567 350 aaPredicted RBP16.02■□□□□ 0.16
CHD4-210ENST00000544040 ST13P50502 369 aaKnown RBP16.02■□□□□ 0.16
CHD4-210ENST00000544040 HMGCS2P54868 508 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 FAM83EQ2M2I3 478 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 SUGP1Q8IWZ8 645 aaKnown RBP16.02■□□□□ 0.16
CHD4-210ENST00000544040 REXO1L1PQ8IX06 675 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 ARAP3Q8WWN8 1544 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 DNALI1O14645 258 aaPredicted RBP16.02■□□□□ 0.16
CHD4-210ENST00000544040 TGM2P21980 687 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 KRT77Q7Z794 578 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 THAP2Q9H0W7 228 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 PTCH1Q13635 1447 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 SOAT2O75908 522 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 RCAN1P53805 252 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 KCNMA1Q12791 1236 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 MMRN1Q13201 1228 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 PHF20Q9BVI0 1012 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 DAPK2Q9UIK4 370 aa16.02■□□□□ 0.16
CHD4-210ENST00000544040 RRM2P31350 389 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 TRAF2Q12933 501 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 NFYCQ13952 458 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 CACHD1Q5VU97 1274 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 MFSD14CQ5VZR4 134 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 FAM117BQ6P1L5 589 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 C11orf88Q6PI97 169 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 IZUMO2Q6UXV1 221 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 CLEC10AQ8IUN9 316 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 FEZF2Q8TBJ5 459 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 UNKQ9C0B0 810 aaKnown RBP16.02■□□□□ 0.15
CHD4-210ENST00000544040 KLHL31Q9H511 634 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 PPCSQ9HAB8 311 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 NMRK2Q9NPI5 230 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 ABCA5Q8WWZ7 1642 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 TRIM24O15164 1050 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 COX10Q12887 443 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 LAMB3Q13751 1172 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 PDIA5Q14554 519 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 C2CD6Q53TS8 623 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 DENND1BQ6P3S1 775 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 RDM1Q8NG50 284 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 OPTNQ96CV9 577 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 KLHL4Q9C0H6 718 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 ANKARQ7Z5J8 1434 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 PRRG1O14668 218 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 KLHL41O60662 606 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 NUP107P57740 925 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 STX5Q13190 355 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 SCARF1Q14162 830 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 MAPK11Q15759 364 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 HIST2H2ACQ16777 129 aaPredicted RBP16.02■□□□□ 0.15
CHD4-210ENST00000544040 HIST2H2AA3Q6FI13 130 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 MTDHQ86UE4 582 aaKnown RBP16.02■□□□□ 0.15
CHD4-210ENST00000544040 FBXO36Q8NEA4 188 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 CASP10Q92851 521 aa16.02■□□□□ 0.15
CHD4-210ENST00000544040 TRMT6Q9UJA5 497 aaKnown RBP16.02■□□□□ 0.15
CHD4-210ENST00000544040 RHOBTB3O94955 611 aa16.01■□□□□ 0.15
CHD4-210ENST00000544040 CAPN1P07384 714 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms