RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ALADP13716 330 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 RPL10AP62906 217 aaKnown RBP21.17■□□□□ 0.98
CPSF1-209ENST00000532725 INCA1Q0VD86 236 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 DDR2Q16832 855 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 NPAS3Q8IXF0 933 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 GPR152Q8TDT2 470 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 B3GNT5Q9BYG0 378 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 KCNK12Q9HB15 430 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 ZNF334Q9HCZ1 680 aaPredicted RBP21.17■□□□□ 0.98
CPSF1-209ENST00000532725 TMEM63CQ9P1W3 806 aa21.17■□□□□ 0.98
CPSF1-209ENST00000532725 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.17■□□□□ 0.98
CPSF1-209ENST00000532725 ANHXE9PGG2 379 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 MYL4P12829 197 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 HMGA1P17096 107 aaKnown RBP21.16■□□□□ 0.98
CPSF1-209ENST00000532725 BDNFP23560 247 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 CYP27A1Q02318 531 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 SDHAF4Q5VUM1 108 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 VSTM1Q6UX27 236 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 ACOT1Q86TX2 421 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 LMO3Q8TAP4 145 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 FAM200AQ8TCP9 573 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 WHAMMQ8TF30 809 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 ING5Q8WYH8 240 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 TNIP3Q96KP6 325 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 CNOT6LQ96LI5 555 aaKnown RBP21.16■□□□□ 0.98
CPSF1-209ENST00000532725 THAP9Q9H5L6 903 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 GDE1Q9NZC3 331 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 IGSF9Q9P2J2 1179 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 HMGXB4Q9UGU5 601 aa21.16■□□□□ 0.98
CPSF1-209ENST00000532725 CILPO75339 1184 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 AFPP02771 609 aaKnown RBP21.15■□□□□ 0.98
CPSF1-209ENST00000532725 CEBPBP17676 345 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 VEPH1Q14D04 833 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 PTPN21Q16825 1174 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 SASS6Q6UVJ0 657 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 PAQR9Q6ZVX9 377 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 GAREM2Q75VX8 874 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 SHKBP1Q8TBC3 707 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 MCRS1Q96EZ8 462 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 TWNKQ96RR1 684 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 IL21Q9HBE4 155 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 TRIOO75962 3097 aa21.15■□□□□ 0.98
CPSF1-209ENST00000532725 CLDN5O00501 218 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 GJA1P17302 382 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 ORC1Q13415 861 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 TPD52L1Q16890 204 aaPredicted RBP21.14■□□□□ 0.97
CPSF1-209ENST00000532725 CREBRFQ8IUR6 639 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 SCN4BQ8IWT1 228 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 EHBP1Q8NDI1 1231 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 ENOX1Q8TC92 643 aaKnown RBP21.14■□□□□ 0.97
CPSF1-209ENST00000532725 RSAD2Q8WXG1 361 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 NXPE3Q969Y0 559 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 ARID3AQ99856 593 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 ZNF518BQ9C0D4 1074 aa21.14■□□□□ 0.97
CPSF1-209ENST00000532725 FAM124BQ9H5Z6 455 aaPredicted RBP21.14■□□□□ 0.97
CPSF1-209ENST00000532725 FGF19O95750 216 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 CSH1P0DML2 217 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 CSH2P0DML3 217 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 CD58P19256 250 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 GRIK1P39086 918 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 ZXDAP98168 799 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 CETN1Q12798 172 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 MTMR3Q13615 1198 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 HTR4Q13639 388 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 TAF12Q16514 161 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 PARM1Q6UWI2 310 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 FUKQ8N0W3 1084 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 SLC44A3Q8N4M1 653 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 C12orf29Q8N999 325 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 STKLD1Q8NE28 680 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 EDAQ92838 391 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 SPATA17Q96L03 361 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 C8orf48Q96LL4 319 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 MYRFLQ96LU7 910 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 CEP295NLQ96MC4 621 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 ZSWIM3Q96MP5 696 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 RPP25Q9BUL9 199 aaKnown RBP21.13■□□□□ 0.97
CPSF1-209ENST00000532725 NT5C1AQ9BXI3 368 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 ELOVL4Q9GZR5 314 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 CISHQ9NSE2 258 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 TMEM30AQ9NV96 361 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 ANO10Q9NW15 660 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 SORCS3Q9UPU3 1222 aa21.13■□□□□ 0.97
CPSF1-209ENST00000532725 A0A1W2PRU2 124 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 SLC38A8A6NNN8 435 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 NOL4O94818 638 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 F11P03951 625 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 GABRR2P28476 465 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 CACNA2D1P54289 1103 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 LRMPQ12912 555 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 CUL2Q13617 745 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 TEAD2Q15562 447 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 TMEM150AQ86TG1 271 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 TTC39CQ8N584 583 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 ST13P5Q8NFI4 369 aaPredicted RBP21.12■□□□□ 0.97
CPSF1-209ENST00000532725 FGF14Q92915 247 aa21.12■□□□□ 0.97
CPSF1-209ENST00000532725 SAMSN1Q9NSI8 373 aaKnown RBP21.12■□□□□ 0.97
CPSF1-209ENST00000532725 F8VP50 259 aa21.11■□□□□ 0.97
CPSF1-209ENST00000532725 TRIM66O15016 1216 aa21.11■□□□□ 0.97
CPSF1-209ENST00000532725 TDGQ13569 410 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms