RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SLC9A7Q96T83 725 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 APOL6Q9BWW8 343 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 OXCT2Q9BYC2 517 aaPredicted RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 ZFATQ9P243 1243 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 CAPN11Q9UMQ6 739 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 FNDC3AQ9Y2H6 1198 aaKnown RBP7.94□□□□□ -1.14
CD44-228ENST00000528455 PCDHA11Q9Y5I1 949 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 RALGAPA2Q2PPJ7 1873 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 EYSQ5T1H1 3165 aa7.94□□□□□ -1.14
CD44-228ENST00000528455 UNC80Q8N2C7 3258 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 CDH23Q9H251 3354 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MEIS3P2A8K0S8 358 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 NDUFB5O43674 189 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 NOL4O94818 638 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 ASS1P00966 412 aaKnown RBP7.93□□□□□ -1.14
CD44-228ENST00000528455 HLA-DRAP01903 254 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 ITGB3P05106 788 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 NFICP08651 508 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 NFKB1P19838 968 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MLH1P40692 756 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 PNPLA4P41247 253 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 RABGGTBP53611 331 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MYL7Q01449 175 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MYO1EQ12965 1108 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 GRIK3Q13003 919 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 BIRC3Q13489 604 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 TRIM14Q14142 442 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 CLLU1OSQ5K130 101 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 C9orf57Q5W0N0 161 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 TRIM65Q6PJ69 517 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 XKR5Q6UX68 686 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 PPFIBP1Q86W92 1011 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 FMNL3Q8IVF7 1028 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 ABI1Q8IZP0 508 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 TTC39CQ8N584 583 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 LRRC52Q8N7C0 313 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 C1orf127Q8N9H9 656 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 RNF169Q8NCN4 708 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MAFAQ8NHW3 353 aaPredicted RBP7.93□□□□□ -1.14
CD44-228ENST00000528455 SEMA4DQ92854 862 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 ZNF689Q96CS4 500 aaPredicted RBP7.93□□□□□ -1.14
CD44-228ENST00000528455 CASD1Q96PB1 797 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 PPP1R9BQ96SB3 815 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 CRACR2AQ9BSW2 395 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MRPL9Q9BYD2 267 aaKnown RBP7.93□□□□□ -1.14
CD44-228ENST00000528455 STK33Q9BYT3 514 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 IMPG2Q9BZV3 1241 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MTMR12Q9C0I1 747 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 CXCL16Q9H2A7 254 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 NKX2-4Q9H2Z4 354 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 RNF19AQ9NV58 838 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 APEX2Q9UBZ4 518 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 MYO6Q9UM54 1294 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 AGAP1Q9UPQ3 857 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 LUC7L2Q9Y383 392 aaKnown RBP7.93□□□□□ -1.14
CD44-228ENST00000528455 PTPRJQ12913 1337 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 FNDC1Q4ZHG4 1894 aaPredicted RBP7.93□□□□□ -1.14
CD44-228ENST00000528455 CHD7Q9P2D1 2997 aa7.93□□□□□ -1.14
CD44-228ENST00000528455 A6NHS1 94 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 GOLGA6L6A8MZA4 724 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 KPNA7A9QM74 516 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 SIN3BO75182 1162 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 DDHD2O94830 711 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 MAP3K6O95382 1288 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 POMCP01189 267 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 KRT19P08727 400 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 TPM1P09493 284 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 FGFR1P11362 822 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 P4HA1P13674 534 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 UCHL3P15374 230 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 TRIM21P19474 475 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 LORP23490 312 aaPredicted RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 TBXAS1P24557 533 aaPredicted RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 ADH6P28332 368 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 SCNN1GP51170 649 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 AFF1P51825 1210 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 MFAP3P55082 362 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 GSDMDP57764 484 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 LILRA4P59901 499 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 MYL6P60660 151 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 WDR5P61964 334 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 ZBED6P86452 979 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 GCNT1Q02742 428 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 DSC1Q08554 894 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 TUSC3Q13454 348 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 UPP1Q16831 310 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 WDR72Q3MJ13 1102 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 LMBRD2Q68DH5 695 aaPredicted RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 PDE12Q6L8Q7 609 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 CACNA2D4Q7Z3S7 1137 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 TMC6Q7Z403 805 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 HERC6Q8IVU3 1022 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.92□□□□□ -1.14
CD44-228ENST00000528455 COLGALT2Q8IYK4 626 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 WHAMMQ8TF30 809 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 SYN2Q92777 582 aaPredicted RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 C18orf25Q96B23 403 aaPredicted RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 HPDLQ96IR7 371 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 NT5C1BQ96P26 610 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 FAM193BQ96PV7 902 aaPredicted RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms