RNA–Protein interactions for RNA: ENST00000520957.1

CLK4-208, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best) BASIC

Gene CLK4, Length 1,690 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-208ENST00000520957 ATXN2LQ8WWM7 1075 aaKnown RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 SUSD6Q92537 303 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 SMG7Q92540 1137 aaKnown RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 NT5C1AQ9BXI3 368 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 POMKQ9H5K3 350 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 ZDHHC7Q9NXF8 308 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 DNMT3BQ9UBC3 853 aaKnown RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 DPP7Q9UHL4 492 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 PLXNA3P51805 1871 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 ZNF445P59923 1031 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 ITIH3Q06033 890 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 SMAD4Q13485 552 aaKnown RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 MTMR3Q13615 1198 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 NFE2Q16621 373 aaPredicted RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 ARHGAP44Q17R89 818 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 ATAT1Q5SQI0 421 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 CES5AQ6NT32 575 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 TMEM270Q6UE05 265 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 SCN4BQ8IWT1 228 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 FUKQ8N0W3 1084 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 CMASQ8NFW8 434 aaPredicted RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 SLC2A14Q8TDB8 520 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 FAXDC2Q96IV6 333 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 HEXIM2Q96MH2 286 aaKnown RBP13.18□□□□□ -0.3
CLK4-208ENST00000520957 KCNK16Q96T55 309 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 PIDD1Q9HB75 910 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 ACP6Q9NPH0 428 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 PCDHB4Q9Y5E5 795 aa13.18□□□□□ -0.3
CLK4-208ENST00000520957 LGALS16A8MUM7 142 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 EPHB6O15197 1021 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 BEST1O76090 585 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 PAPLNO95428 1278 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 LRG1P02750 347 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 HNRNPA1P09651 372 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLK4-208ENST00000520957 PNMA6AP0CW24 399 aaPredicted RBP13.17□□□□□ -0.3
CLK4-208ENST00000520957 GCNT1Q02742 428 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 UBXN1Q04323 297 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 CBX2Q14781 532 aaPredicted RBP13.17□□□□□ -0.3
CLK4-208ENST00000520957 CFAP221Q4G0U5 840 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 POTEHQ6S545 545 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 GAS2L3Q86XJ1 694 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 ST13P5Q8NFI4 369 aaPredicted RBP13.17□□□□□ -0.3
CLK4-208ENST00000520957 SPPL2BQ8TCT7 592 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 TMEM176AQ96HP8 235 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 TNIP3Q96KP6 325 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 ZSWIM1Q9BR11 485 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 CORO1BQ9BR76 489 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 LSM14BQ9BX40 385 aaKnown RBP13.17□□□□□ -0.3
CLK4-208ENST00000520957 APEX2Q9UBZ4 518 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 DNAJC12Q9UKB3 198 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 MAFFQ9ULX9 164 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 TSC2P49815 1807 aa13.17□□□□□ -0.3
CLK4-208ENST00000520957 NOL4O94818 638 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 CAVIN2O95810 425 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 TBXAS1P24557 533 aaPredicted RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 ADORA2BP29275 332 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 HOXA9P31269 272 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 SSTR3P32745 418 aaPredicted RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 CCR2P41597 374 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 ALDH1A3P47895 512 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 TUFMP49411 452 aaKnown RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 SMARCB1Q12824 385 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 SYCP1Q15431 976 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 SMAD2Q15796 467 aaKnown RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 PPP1R26Q5T8A7 1209 aaPredicted RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 KLHDC7AQ5VTJ3 777 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 IQCEQ6IPM2 695 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 DNAJB7Q7Z6W7 309 aaPredicted RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 GPIHBP1Q8IV16 184 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 ITFG1Q8TB96 612 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 TFAP2BQ92481 460 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 TCEAL4Q96EI5 215 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 CYFIP2Q96F07 1278 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 NECAB3Q96P71 396 aaPredicted RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 RTN4Q9NQC3 1192 aaKnown RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 FAM207AQ9NSI2 230 aaPredicted RBP13.16□□□□□ -0.3
CLK4-208ENST00000520957 SIK3Q9Y2K2 1263 aa13.16□□□□□ -0.3
CLK4-208ENST00000520957 F8VP50 259 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 GOLGA6L19H0YKK7 550 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 FOXN3O00409 490 aaPredicted RBP13.15□□□□□ -0.3
CLK4-208ENST00000520957 GJA1P17302 382 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 GRIK1P39086 918 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 MAPRE1Q15691 268 aaKnown RBP13.15□□□□□ -0.3
CLK4-208ENST00000520957 SLC5A9Q2M3M2 681 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 ELMSAN1Q6PJG2 1045 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 C4orf50Q6ZRC1 276 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 FAM35AQ86V20 835 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 ANKRD20A12PQ8NF67 263 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 C2orf15Q8WU43 125 aaKnown RBP13.15□□□□□ -0.3
CLK4-208ENST00000520957 FUBP3Q96I24 572 aaKnown RBP eCLIP13.15□□□□□ -0.3
CLK4-208ENST00000520957 ZNF512Q96ME7 567 aaPredicted RBP13.15□□□□□ -0.3
CLK4-208ENST00000520957 MED10Q9BTT4 135 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 LRRC3Q9BY71 257 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 ZNF334Q9HCZ1 680 aaPredicted RBP13.15□□□□□ -0.3
CLK4-208ENST00000520957 WDR6Q9NNW5 1121 aaKnown RBP13.15□□□□□ -0.3
CLK4-208ENST00000520957 ABCB6Q9NP58 842 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 FHOD1Q9Y613 1164 aa13.15□□□□□ -0.3
CLK4-208ENST00000520957 XYLBO75191 536 aa13.15□□□□□ -0.31
CLK4-208ENST00000520957 SERPINC1P01008 464 aa13.15□□□□□ -0.31
CLK4-208ENST00000520957 RHOP08100 348 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms