RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TAF6P49848 677 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 PTPN11Q06124 597 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 PPP1R2P1Q96PQ5 205 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DDX23Q9BUQ8 820 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 CFLARO15519 480 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 SH3BP5O60239 455 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 CYP2C9P11712 490 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 ITGB5P18084 799 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 RTP1P59025 263 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 MFSD14CQ5VZR4 134 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 TRIM67Q6ZTA4 783 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 FBXO16Q8IX29 292 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 SHC3Q92529 594 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 IFT43Q96FT9 208 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 PCMTD2Q9NV79 361 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DOT1LQ8TEK3 1739 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DNALI1O14645 258 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 TLR2O60603 784 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 CHEK2O96017 543 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DRG2P55039 364 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 ARHGEF6Q15052 776 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DNAL1Q4LDG9 190 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 RASGEF1CQ8N431 466 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 PPHLN1Q8NEY8 458 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 TFB1MQ8WVM0 346 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 TMEM121Q9BTD3 319 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 TRIM15Q9C019 465 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 A1CFQ9NQ94 594 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 NSMCE4AQ9NXX6 385 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 PRDM4Q9UKN5 801 aa11.24□□□□□ -0.61
LIMCH1-205ENST00000503057 DFFAO00273 331 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 TMEM62Q0P6H9 643 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 KCNT1Q5JUK3 1230 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 CYB5D1Q6P9G0 228 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 TRIM4Q9C037 500 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ANGPTL3Q9Y5C1 460 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 IGF2BP3O00425 579 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ADAMTS3O15072 1205 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 MTSS1O43312 755 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 POLBP06746 335 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 PGK2P07205 417 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 PAEPP09466 180 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 PTPRAP18433 802 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 EIF4BP23588 611 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 PGM1P36871 562 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 DNAJC3Q13217 504 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ITGB3BPQ13352 177 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ZNF268Q14587 947 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 CCDC60Q8IWA6 550 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 MIPOL1Q8TD10 442 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 KCNV2Q8TDN2 545 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ATXN2LQ8WWM7 1075 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 KAT5Q92993 513 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 CENPTQ96BT3 561 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 MTFR1LQ9H019 292 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 GRID1Q9ULK0 1009 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 C3orf70A6NLC5 250 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ATP9BO43861 1147 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 HSPA8P11142 646 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 JAM2P57087 298 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 PPWD1Q96BP3 646 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 SDCCAG3Q96C92 435 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 GLIS2Q9BZE0 524 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 SMYD3Q9H7B4 428 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 TRAPPC3O43617 180 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 APOEP02649 317 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 FMO1Q01740 532 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 ORC1Q13415 861 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 R3HDM1Q15032 1099 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 IL31RAQ8NI17 732 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 MBOAT7Q96N66 472 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 SP110Q9HB58 689 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 GTSE1Q9NYZ3 720 aa11.23□□□□□ -0.61
LIMCH1-205ENST00000503057 CXCL8P10145 99 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 PPARGP37231 505 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CPT1AP50416 773 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 LY6KQ17RY6 165 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CATSPERGQ6ZRH7 1159 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ST13P4Q8IZP2 240 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 RYBPQ8N488 228 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 DCLK2Q8N568 766 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ATP6V1E2Q96A05 226 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 MTBPQ96DY7 904 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 TRPV6Q9H1D0 765 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CYP39A1Q9NYL5 469 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 NAALADL1Q9UQQ1 740 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 SPDYE16A6NNV3 312 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ACKR2O00590 384 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 TM9SF1O15321 606 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 TGM2P21980 687 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 PTGER2P43116 358 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 ALDH18A1P54886 795 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 UGP2Q16851 508 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 DCAF6Q58WW2 860 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 RPAINQ86UA6 219 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 CCNJLQ8IV13 435 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 APBB2Q92870 758 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 E2F7Q96AV8 911 aa11.22□□□□□ -0.61
LIMCH1-205ENST00000503057 PAFAH2Q99487 392 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms