RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 NDUFB10O96000 172 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 P4HBP07237 508 aaKnown RBP10.14□□□□□ -0.79
SYNE1-230ENST00000495090 VIL1P09327 827 aaKnown RBP10.14□□□□□ -0.79
SYNE1-230ENST00000495090 PYGBP11216 843 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 UQCRBP14927 111 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 RARRES1P49788 294 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 NOMO3P69849 1222 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 MED21Q13503 144 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 MYBPC3Q14896 1274 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 EFTUD2Q15029 972 aaKnown RBP eCLIP10.14□□□□□ -0.79
SYNE1-230ENST00000495090 C1orf146Q5VVC0 180 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 CDC42EP5Q6NZY7 148 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 TATDN1Q6P1N9 297 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 SPOCD1Q6ZMY3 1216 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 CAPN12Q6ZSI9 719 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 SV2AQ7L0J3 742 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 DHDDSQ86SQ9 333 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 MAP4K3Q8IVH8 894 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 FEZF2Q8TBJ5 459 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 HIC2Q96JB3 615 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 SENP7Q9BQF6 1050 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 SIKE1Q9BRV8 207 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 S100A14Q9HCY8 104 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 C1orf112Q9NSG2 853 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 PARVAQ9NVD7 372 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 MKS1Q9NXB0 559 aa10.14□□□□□ -0.79
SYNE1-230ENST00000495090 DDX56Q9NY93 547 aaKnown RBP10.14□□□□□ -0.79
SYNE1-230ENST00000495090 ZNF335Q9H4Z2 1342 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-230ENST00000495090 hCG_1818297A0A087WSY0 165 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 LRRC37AA6NMS7 1700 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 I3L4J1 428 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 TLR3O15455 904 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 TMCC1O94876 653 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 KRT1P04264 644 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ASLP04424 464 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 POLR2MP0CAP2 368 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 CCDC166P0CW27 439 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ETS1P14921 441 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 VAV1P15498 845 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 AOC1P19801 751 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 BGNP21810 368 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SSTR1P30872 391 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 IRX4P78413 519 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 CYP24A1Q07973 514 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 R3HDM1Q15032 1099 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM259Q4ZIN3 620 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 TFDP3Q5H9I0 405 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 HP1BP3Q5SSJ5 553 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ATG16L1Q676U5 607 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 MFSD7Q6UXD7 560 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 C15orf39Q6ZRI6 1047 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ALYREFQ86V81 257 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SPATA24Q86W54 205 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 TREML1Q86YW5 311 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ANKMY2Q8IV38 441 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SLC44A1Q8WWI5 657 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 CPT1BQ92523 772 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 RPGRQ92834 1020 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 PPP1R14BQ96C90 147 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 BTBD9Q96Q07 612 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 CCDC106Q9BWC9 280 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 COA1Q9GZY4 146 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 PPM1HQ9ULR3 514 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 FAM237BA0A1B0GVD1 139 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 GOLGA8IPA6NC78 632 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 GOLGA8JA6NMD2 632 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SGK1O00141 431 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 KCNQ2O43526 872 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 PEX1O43933 1283 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 CCNT2O60583 730 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 BBOX1O75936 387 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ENO1P06733 434 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SERPINA6P08185 405 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 KRT10P13645 584 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 DSG3P32926 999 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 MAGEA8P43361 318 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SNAP25P60880 206 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 GTF2IP78347 998 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 IKQ13123 557 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 PTK7Q13308 1070 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 DBN1Q16643 649 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 RASSF3Q86WH2 238 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 NCAPG2Q86XI2 1143 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 PALM2Q8IXS6 379 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ABRAQ8N0Z2 381 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 TTC13Q8NBP0 860 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 FBXO36Q8NEA4 188 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 CCDC127Q96BQ5 260 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 LENG1Q96BZ8 264 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 DGCR14Q96DF8 476 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 MRRFQ96E11 262 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 FAM111AQ96PZ2 611 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 C11orf70Q9BRQ4 267 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 WDR83Q9BRX9 315 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 EBF3Q9H4W6 596 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 OCEL1Q9H607 264 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 STN1Q9H668 368 aaKnown RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 SUDS3Q9H7L9 328 aaPredicted RBP10.13□□□□□ -0.79
SYNE1-230ENST00000495090 ARMCX1Q9P291 453 aa10.13□□□□□ -0.79
SYNE1-230ENST00000495090 POLLQ9UGP5 575 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms