RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 L3MBTL3Q96JM7 780 aaPredicted RBP13.4□□□□□ -0.26
SHOX2-205ENST00000490689 XAB2Q9HCS7 855 aaKnown RBP13.4□□□□□ -0.26
SHOX2-205ENST00000490689 SAR1AQ9NR31 198 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 STRIP2Q9ULQ0 834 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 KAT6AQ92794 2004 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 RNF103-CHMP3A0A140T963 221 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 GMNNO75496 209 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 CLPTM1O96005 669 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 PDGFRAP16234 1089 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 JAM2P57087 298 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 IFRD2Q12894 506 aaPredicted RBP13.4□□□□□ -0.26
SHOX2-205ENST00000490689 TRMT5Q32P41 509 aaKnown RBP13.4□□□□□ -0.26
SHOX2-205ENST00000490689 PPP1R15BQ5SWA1 713 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 SULF1Q8IWU6 871 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 DEFB107AQ8IZN7 70 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 CLMNQ96JQ2 1002 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 SRPK1Q96SB4 655 aaKnown RBP13.4□□□□□ -0.26
SHOX2-205ENST00000490689 SLC38A10Q9HBR0 1119 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 NRBP2Q9NSY0 501 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 GTSE1Q9NYZ3 720 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 TAGLN3Q9UI15 199 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 TNS2Q63HR2 1409 aa13.4□□□□□ -0.26
SHOX2-205ENST00000490689 ZBBXA8MT70 800 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 KBTBD13C9JR72 458 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 GIPC1O14908 333 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 ADRB2P07550 413 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 ARL4AP40617 200 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 NUDT2P50583 147 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 VCPP55072 806 aaKnown RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 KRT76Q01546 638 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 MCL1Q07820 350 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 PIGHQ14442 188 aaPredicted RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 KBTBD12Q3ZCT8 623 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 EFHC1Q5JVL4 640 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 TTC39BQ5VTQ0 682 aaPredicted RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 MOXD1Q6UVY6 613 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 C4orf50Q6ZRC1 276 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 EFHD1Q9BUP0 239 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 MECRQ9BV79 373 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 CYP26B1Q9NR63 512 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 WASF2Q9Y6W5 498 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 E9PBE3 544 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 KLHL41O60662 606 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 ZMPSTE24O75844 475 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 SERPINB5P36952 375 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 SKIV2L2P42285 1042 aaKnown RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 RHBDL3P58872 404 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 CUL2Q13617 745 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 CYLC2Q14093 348 aaPredicted RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 MPP2Q14168 576 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 ANO7Q6IWH7 933 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 C16orf87Q6PH81 154 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 GJA3Q9Y6H8 435 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 LMTK3Q96Q04 1460 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 GSC2O15499 205 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 SLC26A4O43511 780 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 APOEP02649 317 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 JADE1Q6IE81 842 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 RIPOR1Q6ZS17 1223 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 CCT7Q99832 543 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 LDHAP00338 332 aaKnown RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 PROCP04070 461 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 RPL7AP62424 266 aaKnown RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 HEATR6Q6AI08 1181 aaKnown RBP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 LAYNQ6UX15 382 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 FAM71AQ8IYT1 594 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 GDPD5Q8WTR4 605 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 LRRN4Q8WUT4 740 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 EXT2Q93063 718 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 CNKSR1Q969H4 720 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 PPP2R3CQ969Q6 453 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 HDAC11Q96DB2 347 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 KREMEN1Q96MU8 473 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHOX2-205ENST00000490689 GPATCH2LQ9NWQ4 482 aa13.39□□□□□ -0.27
SHOX2-205ENST00000490689 CSDE1O75534 798 aaKnown RBP13.38□□□□□ -0.27
SHOX2-205ENST00000490689 FAM200BP0CF97 657 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 KCNA4P22459 653 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 RARRES1P49788 294 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 OCRLQ01968 901 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 PRPSAP1Q14558 356 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 CWF19L1Q69YN2 538 aaKnown RBP13.38□□□□□ -0.27
SHOX2-205ENST00000490689 GRAMD4Q6IC98 578 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 TTC7BQ86TV6 843 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 PPCSQ9HAB8 311 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 ATP9BO43861 1147 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 PEX11AO75192 247 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 MCF2P10911 925 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 SNX16P57768 344 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 FLOT2Q14254 428 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 R3HDM1Q15032 1099 aaKnown RBP13.38□□□□□ -0.27
SHOX2-205ENST00000490689 SLC10A5Q5PT55 438 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 C16orf46Q6P387 395 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 CMTM5Q96DZ9 223 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 KCNK16Q96T55 309 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 RIT2Q99578 217 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 KLHL4Q9C0H6 718 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 KCNQ5Q9NR82 932 aa13.38□□□□□ -0.27
SHOX2-205ENST00000490689 C20orf96Q9NUD7 363 aaPredicted RBP13.38□□□□□ -0.27
SHOX2-205ENST00000490689 LTN1O94822 1766 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms