RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 LETM1O95202 739 aaPredicted RBP8.58□□□□□ -1.04
USP40-216ENST00000485943 HLA-DRAP01903 254 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 CYP11A1P05108 521 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 CD58P19256 250 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 ACAT1P24752 427 aaKnown RBP8.58□□□□□ -1.04
USP40-216ENST00000485943 HOXA9P31269 272 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 HOXD13P35453 343 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 NLRP12P59046 1061 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 IFRD2Q12894 506 aaPredicted RBP8.58□□□□□ -1.04
USP40-216ENST00000485943 DUSP4Q13115 394 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 MORC3Q14149 939 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 STX1AQ16623 288 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 COBLL1Q53SF7 1204 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 CENPPQ6IPU0 288 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 SYCE2Q6PIF2 218 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 SV2AQ7L0J3 742 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 FILIP1Q7Z7B0 1213 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 GPR149Q86SP6 731 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 YAF2Q8IY57 180 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 PDCL2Q8N4E4 241 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 FBXL13Q8NEE6 735 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 CMASQ8NFW8 434 aaPredicted RBP8.58□□□□□ -1.04
USP40-216ENST00000485943 FAM174AQ8TBP5 190 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 MSLNLQ96KJ4 702 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 SYT15Q9BQS2 421 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 ACBD6Q9BR61 282 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 PI4K2AQ9BTU6 479 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 NACA2Q9H009 215 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 MFSD1Q9H3U5 465 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 POMKQ9H5K3 350 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 LMBRD1Q9NUN5 540 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 GDAP2Q9NXN4 497 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP40-216ENST00000485943 UXTQ9UBK9 157 aaPredicted RBP8.58□□□□□ -1.04
USP40-216ENST00000485943 RWDD2AQ9UIY3 292 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 FBXL21Q9UKT6 434 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 CDH9Q9ULB4 789 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 INSL5Q9Y5Q6 135 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 BRWD1Q9NSI6 2320 aa8.58□□□□□ -1.04
USP40-216ENST00000485943 TRANK1O15050 2925 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 CDH23Q9H251 3354 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 ABL1P00519 1130 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 AFPP02771 609 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 BMP1P13497 986 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 TBXAS1P24557 533 aaPredicted RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 LTBRP36941 435 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 AARSP49588 968 aaKnown RBP eCLIP8.57□□□□□ -1.04
USP40-216ENST00000485943 CDR1P51861 262 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 PSMC1P62191 440 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 NOP14P78316 857 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 DLG4P78352 724 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 GPR17Q13304 367 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 SKOR2Q2VWA4 1001 aaPredicted RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 MDH1BQ5I0G3 518 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 INTS6LQ5JSJ4 861 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 TDRD10Q5VZ19 366 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 CAVIN1Q6NZI2 390 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 MTSS1LQ765P7 747 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 FRMD5Q7Z6J6 570 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 PPM1KQ8N3J5 372 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 ADAM32Q8TC27 787 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 GIPC2Q8TF65 315 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 NT5C1BQ96P26 610 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 NECAB3Q96P71 396 aaPredicted RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 NIF3L1Q9GZT8 377 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 ATXN3LQ9H3M9 355 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 WDR6Q9NNW5 1121 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 DMAC2Q9NW81 257 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 RAB20Q9NX57 234 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 L1RE1Q9UN81 338 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 FCF1Q9Y324 198 aaKnown RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 YIPF1Q9Y548 306 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 ASB3Q9Y575 518 aa8.57□□□□□ -1.04
USP40-216ENST00000485943 ZFP37Q9Y6Q3 630 aaPredicted RBP8.57□□□□□ -1.04
USP40-216ENST00000485943 ZNF638Q14966 1978 aaKnown RBP8.56□□□□□ -1.04
USP40-216ENST00000485943 MTMR11A4FU01 709 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ADAM12O43184 909 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 CST3P01034 146 aaPredicted RBP8.56□□□□□ -1.04
USP40-216ENST00000485943 RHOP08100 348 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 CSH1P0DML2 217 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 CSH2P0DML3 217 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 WARSP23381 471 aaKnown RBP8.56□□□□□ -1.04
USP40-216ENST00000485943 CDC25CP30307 473 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 RAP1GAPP47736 663 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 WNT7BP56706 349 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ENPEPQ07075 957 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 LRMPQ12912 555 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 MTMR3Q13615 1198 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ZACNQ401N2 412 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 CLEC17AQ6ZS10 378 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 TCEAL8Q8IYN2 117 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 PHTF2Q8N3S3 785 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ATAD1Q8NBU5 361 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 SPATA20Q8TB22 786 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 ING5Q8WYH8 240 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 MRPS31Q92665 395 aaKnown RBP8.56□□□□□ -1.04
USP40-216ENST00000485943 FAM84AQ96KN4 292 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 CNOT6LQ96LI5 555 aaKnown RBP8.56□□□□□ -1.04
USP40-216ENST00000485943 ARHGAP9Q9BRR9 750 aa8.56□□□□□ -1.04
USP40-216ENST00000485943 NT5C1AQ9BXI3 368 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms