RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 IQCDQ96DY2 449 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 TMEM176AQ96HP8 235 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 MRPL45Q9BRJ2 306 aaKnown RBP8.8□□□□□ -1
SF3A1-208ENST00000485618 MED10Q9BTT4 135 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 PRKD2Q9BZL6 878 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 SMYD3Q9H7B4 428 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.8□□□□□ -1
SF3A1-208ENST00000485618 ABI2Q9NYB9 513 aaPredicted RBP8.8□□□□□ -1
SF3A1-208ENST00000485618 GTF3C4Q9UKN8 822 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 POLIQ9UNA4 740 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 PCDHB4Q9Y5E5 795 aa8.8□□□□□ -1
SF3A1-208ENST00000485618 WDR27A2RRH5 827 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 CILPO75339 1184 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 PAEPP09466 180 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 TPM1P09493 284 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 HAPLN1P10915 354 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 KRT5P13647 590 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 PTPN2P17706 415 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 IGFBP6P24592 240 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 ACAT1P24752 427 aaKnown RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 GRIK1P39086 918 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 USP8P40818 1118 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 NDST1P52848 882 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 COPB1P53618 953 aaKnown RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 CDH8P55286 799 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 UBASH3AP57075 661 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 KCNC3Q14003 757 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 NCAPHQ15003 741 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 IQCB1Q15051 598 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 PABPC1LQ4VXU2 614 aaKnown RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 MDH1BQ5I0G3 518 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 MIIPQ5JXC2 388 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 RARS2Q5T160 578 aaKnown RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 RSPO2Q6UXX9 243 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 RNF19BQ6ZMZ0 732 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 GPR149Q86SP6 731 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 LUZP1Q86V48 1076 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 ATAD1Q8NBU5 361 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 SMRP1Q8NCR6 262 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 ZNF397Q8NF99 534 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 NEK11Q8NG66 645 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 OR10T2Q8NGX3 314 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 SMG7Q92540 1137 aaKnown RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 TATDN2Q93075 761 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 ACSF2Q96CM8 615 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 SMARCD1Q96GM5 515 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 FAM84AQ96KN4 292 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 PGLYRP2Q96PD5 576 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 GCNAQ96QF7 691 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 SEPT5Q99719 369 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 NUP58Q9BVL2 599 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 APOBEC3GQ9HC16 384 aaKnown RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 PLCB1Q9NQ66 1216 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 UXTQ9UBK9 157 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 HESX1Q9UBX0 185 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 ZMYM5Q9UJ78 669 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 NR2E1Q9Y466 385 aa8.79□□□□□ -1
SF3A1-208ENST00000485618 ZFP37Q9Y6Q3 630 aaPredicted RBP8.79□□□□□ -1
SF3A1-208ENST00000485618 MYBPHLA2RUH7 354 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 MTMR11A4FU01 709 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 TMEM221A6NGB7 291 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 M0R296 226 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 ADAM12O43184 909 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 FAM200BP0CF97 657 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 CSH1P0DML2 217 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 CSH2P0DML3 217 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 VDRP11473 427 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 CD19P15391 556 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 LMO2P25791 158 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 PPP3CCP48454 512 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 FANCCQ00597 558 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 PTK2Q05397 1052 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 TWF1Q12792 350 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 SGO2Q562F6 1265 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 TMEM270Q6UE05 265 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 TMC5Q6UXY8 1006 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 RRAGAQ7L523 313 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 OTOP3Q7RTS5 596 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 CACNA2D4Q7Z3S7 1137 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 ACOT1Q86TX2 421 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 SUGP1Q8IWZ8 645 aaKnown RBP8.78□□□□□ -1
SF3A1-208ENST00000485618 LMO3Q8TAP4 145 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 EDAQ92838 391 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 CYFIP2Q96F07 1278 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 MSLNLQ96KJ4 702 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 SPATA17Q96L03 361 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 SPAG5Q96R06 1193 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 HNRNPABQ99729 332 aaKnown RBP8.78□□□□□ -1
SF3A1-208ENST00000485618 RTP3Q9BQQ7 232 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 LSM14BQ9BX40 385 aaKnown RBP8.78□□□□□ -1
SF3A1-208ENST00000485618 GPR88Q9GZN0 384 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 RTN4Q9NQC3 1192 aaKnown RBP8.78□□□□□ -1
SF3A1-208ENST00000485618 ASAH2Q9NR71 780 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 COMMD8Q9NX08 183 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.78□□□□□ -1
SF3A1-208ENST00000485618 CLEC1BQ9P126 229 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 USP15Q9Y4E8 981 aaPredicted RBP8.78□□□□□ -1
SF3A1-208ENST00000485618 CEP83Q9Y592 693 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 INSL5Q9Y5Q6 135 aa8.78□□□□□ -1
SF3A1-208ENST00000485618 A0A1W2PQC6 194 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms