RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 NKX1-2Q9UD57 310 aaPredicted RBP8.11□□□□□ -1.11
USP4-211ENST00000485450 CDY2AQ9Y6F7 541 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 CHD9Q3L8U1 2897 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 FSCN2O14926 492 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 P4HA2O15460 535 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 TSPAN1O60635 241 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 TMCC1O94876 653 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 GAP43P17677 238 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 PLCG1P19174 1290 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 COPS2P61201 443 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 BNIP1Q12981 228 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.11□□□□□ -1.11
USP4-211ENST00000485450 KRT79Q5XKE5 535 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 EFCAB12Q6NXP0 572 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 IRGCQ6NXR0 463 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 POTEGQ6S5H5 508 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 SLC9A9Q8IVB4 645 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 CMTR2Q8IYT2 770 aaKnown RBP8.11□□□□□ -1.11
USP4-211ENST00000485450 TDHQ8IZJ6 230 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 UCMAQ8WVF2 138 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 PPP2R3CQ969Q6 453 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 TLCD1Q96CP7 247 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 IFT74Q96LB3 600 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 HAPLN3Q96S86 360 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 FAM192AQ9GZU8 254 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 ISCUQ9H1K1 167 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 ABCF3Q9NUQ8 709 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 SAMD15Q9P1V8 674 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 RWDD2AQ9UIY3 292 aa8.11□□□□□ -1.11
USP4-211ENST00000485450 KIAA1549LQ6ZVL6 1849 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 RSPH10B2B2RC85 870 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 USO1O60763 962 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 PDHA1P08559 390 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 RSPH10BP0C881 870 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CYP2C9P11712 490 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CTNNA1P35221 906 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 HOXD13P35453 343 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 EFNA5P52803 228 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 MAGOHP61326 146 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 MCL1Q07820 350 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 LSAMPQ13449 338 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 NEPROQ6NW34 567 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 FAM117BQ6P1L5 589 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 RSPH3Q86UC2 560 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 NPAS4Q8IUM7 802 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 OR2W6PQ8NHA6 318 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 ZNF507Q8TCN5 953 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 FBF1Q8TES7 1133 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 BADQ92934 168 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 HPS3Q969F9 1004 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 MAGOHBQ96A72 148 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 KLHL29Q96CT2 875 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 MAELQ96JY0 434 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 PBKQ96KB5 322 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 SAMD11Q96NU1 681 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 FAM117AQ9C073 453 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 LRRC27Q9C0I9 530 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CCDC134Q9H6E4 229 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CDHR5Q9HBB8 845 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CTNND2Q9UQB3 1225 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 COL4A3BPQ9Y5P4 624 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 SLC4A7Q9Y6M7 1214 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 HELZP42694 1942 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 NUP210Q8TEM1 1887 aaPredicted RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 PP2D1A8MPX8 630 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 H0YCG3 227 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 TMEM189-UBE2V1I3L0A0 370 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 MGEA5O60502 916 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 DGKIO75912 1065 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 PLA2G4BP0C869 781 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CALB2P22676 271 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 ECHS1P30084 290 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 CXCR5P32302 372 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 MLH1P40692 756 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 PEX5P50542 639 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 GEMIN4P57678 1058 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 CTTNQ14247 550 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 USP49Q70CQ1 688 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 SNX29Q8TEQ0 813 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 LARP4BQ92615 738 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 TMEM39AQ9NV64 488 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 ETNK2Q9NVF9 386 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 DLGAP2Q9P1A6 1054 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 TNFSF13BQ9Y275 285 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 TBC1D30Q9Y2I9 924 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 SH3GLB1Q9Y371 365 aa8.1□□□□□ -1.11
USP4-211ENST00000485450 MKI67P46013 3256 aaKnown RBP8.1□□□□□ -1.11
USP4-211ENST00000485450 GRID2IPA4D2P6 1211 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZNF263O14978 683 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZBTB39O15060 712 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 RHOBTB3O94955 611 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 OAS1P00973 400 aaKnown RBP8.09□□□□□ -1.11
USP4-211ENST00000485450 NFKBIAP25963 317 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 GSTT1P30711 240 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 CCNFP41002 786 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 MTMR3Q13615 1198 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 ZCWPW2Q504Y3 356 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 FAM209AQ5JX71 171 aa8.09□□□□□ -1.11
USP4-211ENST00000485450 PADI6Q6TGC4 694 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms