RNA–Protein interactions for RNA: ENST00000484733.6

SCFD1-206, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 2,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-206ENST00000484733 RAB23Q9ULC3 237 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 F5P12259 2224 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 TRDMT1O14717 391 aaKnown RBP12.29□□□□□ -0.44
SCFD1-206ENST00000484733 KRT19P08727 400 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 WARSP23381 471 aaKnown RBP12.29□□□□□ -0.44
SCFD1-206ENST00000484733 CYP2F1P24903 491 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 PDGFRLQ15198 375 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 MAB21L3Q8N8X9 362 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 HPDLQ96IR7 371 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 HSPBP1Q9NZL4 362 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 GTF3C4Q9UKN8 822 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 CDH9Q9ULB4 789 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 R3HCC1Q9Y3T6 440 aaKnown RBP12.29□□□□□ -0.44
SCFD1-206ENST00000484733 DMDP11532 3685 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 ZNF292O60281 2723 aa12.29□□□□□ -0.44
SCFD1-206ENST00000484733 TADA3O75528 432 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 TCF3P15923 654 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 PFKLP17858 780 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 ACAT1P24752 427 aaKnown RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 AMPD2Q01433 879 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 LMNB2Q03252 620 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 TNK2Q07912 1038 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 EHHADHQ08426 723 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 DDR2Q16832 855 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 RSPO4Q2I0M5 234 aaPredicted RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 TMEM196Q5HYL7 178 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 C4orf50Q6ZRC1 276 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 WDR5BQ86VZ2 330 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 SPATA2LQ8IUW3 424 aaPredicted RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 OR5B17Q8NGF7 314 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 TTC8Q8TAM2 541 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 SPATA17Q96L03 361 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 SMG9Q9H0W8 520 aaKnown RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 PTPRJQ12913 1337 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 CHURC1-FNTBB4DL54 471 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 RETP07949 1114 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 FNTBP49356 437 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 MAPRE1Q15691 268 aaKnown RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 TXNDC8Q6A555 127 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 SHC4Q6S5L8 630 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 VSTM1Q6UX27 236 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 Q6ZS52 159 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 CBWD2Q8IUF1 395 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 GLIS3Q8NEA6 775 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 KBTBD7Q8WVZ9 684 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 FOXD4L1Q9NU39 408 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 CGNQ9P2M7 1197 aaKnown RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 TFIP11Q9UBB9 837 aaKnown RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 MAGEC2Q9UBF1 373 aaPredicted RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 MAGED2Q9UNF1 606 aaPredicted RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 CCL26Q9Y258 94 aa12.28□□□□□ -0.44
SCFD1-206ENST00000484733 ZNF638Q14966 1978 aaKnown RBP12.28□□□□□ -0.44
SCFD1-206ENST00000484733 CCDC163A0A0D9SF12 145 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 TGFB1I1O43294 461 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 HRO43593 1189 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 USP17L7P0C7H9 530 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 CDR1P51861 262 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 ASIC1P78348 528 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 FAM160A1Q05DH4 1040 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 PSMD6Q15008 389 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 FAM26FQ5R3K3 315 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 SDHAF4Q5VUM1 108 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 ATL3Q6DD88 541 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 UNC13DQ70J99 1090 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 C12orf56Q8IXR9 622 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 NOC3LQ8WTT2 800 aaKnown RBP12.27□□□□□ -0.44
SCFD1-206ENST00000484733 HPS3Q969F9 1004 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 EXOC4Q96A65 974 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 DHX58Q96C10 678 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 FAM84AQ96KN4 292 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 SYT15Q9BQS2 421 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 AGPAT3Q9NRZ7 376 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 GCNT4Q9P109 453 aa12.27□□□□□ -0.44
SCFD1-206ENST00000484733 VPS13AQ96RL7 3174 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 GREB1Q4ZG55 1949 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 ATG13O75143 517 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 TACC1O75410 805 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 STAU1O95793 577 aaKnown RBP12.27□□□□□ -0.45
SCFD1-206ENST00000484733 DMWDQ09019 674 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 GRSF1Q12849 480 aaKnown RBP eCLIP12.27□□□□□ -0.45
SCFD1-206ENST00000484733 USP4Q13107 963 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 ZNF77Q15935 545 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 BMT2Q1RMZ1 405 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 LMBRD2Q68DH5 695 aaPredicted RBP12.27□□□□□ -0.45
SCFD1-206ENST00000484733 FSTL4Q6MZW2 842 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 CC2D1AQ6P1N0 951 aaPredicted RBP12.27□□□□□ -0.45
SCFD1-206ENST00000484733 TRAPPC11Q7Z392 1133 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 KIAA1958Q8N8K9 716 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 FSIP1Q8NA03 581 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 CHFRQ96EP1 664 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 CGRRF1Q99675 332 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 PARD6AQ9NPB6 346 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 ANAPC1Q9H1A4 1944 aa12.27□□□□□ -0.45
SCFD1-206ENST00000484733 TRAV19A0A0A6YYK7 116 aa12.26□□□□□ -0.45
SCFD1-206ENST00000484733 PVALEFA0A1B0GWK0 134 aa12.26□□□□□ -0.45
SCFD1-206ENST00000484733 PDE6CP51160 858 aa12.26□□□□□ -0.45
SCFD1-206ENST00000484733 SIM2Q14190 667 aaPredicted RBP12.26□□□□□ -0.45
SCFD1-206ENST00000484733 SNRNP35Q16560 246 aaKnown RBP12.26□□□□□ -0.45
SCFD1-206ENST00000484733 RIN3Q8TB24 985 aa12.26□□□□□ -0.45
SCFD1-206ENST00000484733 OSCP1Q8WVF1 389 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms