RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 GINS2Q9Y248 185 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 PRRC2AP48634 2157 aaKnown RBP5.7□□□□□ -1.5
HMGB1-207ENST00000468384 ABCB11O95342 1321 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 CCDC171Q6TFL3 1326 aa5.7□□□□□ -1.5
HMGB1-207ENST00000468384 F6X3S4 739 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 MEN1O00255 615 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 CBX4O00257 560 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 NOP56O00567 594 aaKnown RBP5.69□□□□□ -1.5
HMGB1-207ENST00000468384 ALDH1A2O94788 518 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 MICAL2O94851 1124 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 CAPN3P20807 821 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 DRD1P21728 446 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 UBA1P22314 1058 aaKnown RBP5.69□□□□□ -1.5
HMGB1-207ENST00000468384 TXLNAP40222 546 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 RFX5P48382 616 aaPredicted RBP5.69□□□□□ -1.5
HMGB1-207ENST00000468384 CDK8P49336 464 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 POLE2P56282 527 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 CYP4F2P78329 520 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 ASIC1P78348 528 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 BNC1Q01954 994 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 SP2Q02086 613 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 TNK2Q07912 1038 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 C8orf34Q49A92 452 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF394Q53GI3 561 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 SLC36A4Q6YBV0 504 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 TP53INP2Q8IXH6 220 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 SLC7A14Q8TBB6 771 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 TCEAL4Q96EI5 215 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 HSPA12BQ96MM6 686 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 LNPKQ9C0E8 428 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 FBRSL1Q9HCM7 1045 aaKnown RBP5.69□□□□□ -1.5
HMGB1-207ENST00000468384 TIMMDC1Q9NPL8 285 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.69□□□□□ -1.52e-6■□□□□ 10.8
HMGB1-207ENST00000468384 FNIP2Q9P278 1114 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 PCDHGB7Q9Y5F8 929 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 FANCIQ9NVI1 1328 aa5.69□□□□□ -1.5
HMGB1-207ENST00000468384 SONP18583 2426 aaKnown RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 C9orf172C9J069 976 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 NBPF7P0C2Y1 421 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 PCSK2P16519 638 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 DUSP3P51452 185 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 KRTAP10-9P60411 292 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 PPP2R2AP63151 447 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 RACK1P63244 317 aaKnown RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 KLRB1Q12918 225 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 SRSF6Q13247 344 aaKnown RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 ITPRIPL2Q3MIP1 535 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF648Q5T619 568 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 UTP14CQ5TAP6 766 aaKnown RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 IGF2-ASQ6U949 168 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 SHISA2Q6UWI4 295 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 HAUS6Q7Z4H7 955 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 CATIPQ7Z7H3 387 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 RNF168Q8IYW5 571 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 TSPYL6Q8N831 410 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 ZSCAN18Q8TBC5 510 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 HTR3CQ8WXA8 447 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 E2F7Q96AV8 911 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 CENPTQ96BT3 561 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 CHFRQ96EP1 664 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 C5orf34Q96MH7 638 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 IWS1Q96ST2 819 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 ZSCAN10Q96SZ4 725 aaPredicted RBP5.68□□□□□ -1.5
HMGB1-207ENST00000468384 SEMA6CQ9H3T2 930 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 CLIP2Q9UDT6 1046 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 ADAM21Q9UKJ8 722 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 FAN1Q9Y2M0 1017 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 KAT6AQ92794 2004 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 WDR19Q8NEZ3 1342 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 PTPRDP23468 1912 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 TENM1Q9UKZ4 2725 aa5.68□□□□□ -1.5
HMGB1-207ENST00000468384 A0A1B0GTW7 788 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 DBX1A6NMT0 343 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 BNIP3LO60238 219 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 USP12O75317 370 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 CIAO1O76071 339 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 LDOC1O95751 146 aaPredicted RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 EFEMP2O95967 443 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 MT-CO3P00414 261 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 ALDH2P05091 517 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 IFIT2P09913 472 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 ZNF853P0CG23 659 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 ATP2B1P20020 1258 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 EIF4BP23588 611 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 MAOBP27338 520 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 RBMS1P29558 406 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 DNAJA1P31689 397 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 YBX1P67809 324 aaKnown RBP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 IGBP1P78318 339 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 ST3GAL1Q11201 340 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 PTPAQ15257 358 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 CRY1Q16526 586 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.67□□□□□ -1.5
HMGB1-207ENST00000468384 ARHGAP29Q52LW3 1261 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 SLFN13Q68D06 897 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 BORAQ6PGQ7 559 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 BIVMQ86UB2 503 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 FAM228AQ86W67 206 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 NME8Q8N427 588 aa5.67□□□□□ -1.5
HMGB1-207ENST00000468384 GMCL1P1Q8NEA9 526 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms