RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 GLI1P08151 1106 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 PYGMP11217 842 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 ITGA4P13612 1032 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 ELNP15502 786 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 GBP1P32455 592 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 GABRB2P47870 512 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 MARCKSL1P49006 195 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 RAB27AP51159 221 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 TRIM32Q13049 653 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 PTK7Q13308 1070 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 ACAP1Q15027 740 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 PTGISQ16647 500 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 C2CD6Q53TS8 623 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 MAP3K21Q5TCX8 1036 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 CCSAPQ6IQ19 270 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 DPH6Q7L8W6 267 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 KATNAL2Q8IYT4 538 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 NIPA2Q8N8Q9 360 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 CAVIN3Q969G5 261 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 TWNKQ96RR1 684 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 FAM114A2Q9NRY5 505 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 FAM105AQ9NUU6 356 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 HESX1Q9UBX0 185 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 NOD1Q9Y239 953 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 SQORQ9Y6N5 450 aa11.17□□□□□ -0.62
VIPAS39-203ENST00000448935 THSD7BQ9C0I4 1608 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 SCN1AP35498 2009 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 SMAPO00193 183 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 PODXLO00592 558 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 TRPA1O75762 1119 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 SASH3O75995 380 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 KRT3P12035 628 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 SKIP12755 728 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 DESP17661 470 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 LRPAP1P30533 357 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 GPD2P43304 727 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 FNTAP49354 379 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 PSMC1P62191 440 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 DR1Q01658 176 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 MGAT3Q09327 533 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 NFX1Q12986 1120 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 CYP1B1Q16678 543 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 PTPN20Q4JDL3 420 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 HSP90B2PQ58FF3 399 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 ODF2Q5BJF6 829 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 GLRA4Q5JXX5 417 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 PHLDB2Q86SQ0 1253 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 C12orf50Q8NA57 414 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 SMG8Q8ND04 991 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 EXD1Q8NHP7 514 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 CD99L2Q8TCZ2 262 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 MAGOHBQ96A72 148 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 C18orf25Q96B23 403 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 RBM41Q96IZ5 413 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 MCEEQ96PE7 176 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 TSEN34Q9BSV6 310 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 ALG2Q9H553 416 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 DDX56Q9NY93 547 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 PCYOX1Q9UHG3 505 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 AMACRQ9UHK6 382 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 FEZ2Q9UHY8 353 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 GIT1Q9Y2X7 761 aa11.16□□□□□ -0.62
VIPAS39-203ENST00000448935 A8MXQ7 604 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 HUS1O60921 280 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 CHRNA1P02708 482 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 THPOP40225 353 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 SSR1P43307 286 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 PLA2G4AP47712 749 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 COPS2P61201 443 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 PDCLQ13371 301 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 ITGA7Q13683 1181 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 SMC1AQ14683 1233 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 HADHQ16836 314 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 ARHGAP17Q68EM7 881 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 SND1Q7KZF4 910 aaKnown RBP eCLIP11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 RCOR2Q8IZ40 523 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 TOP6BLQ8N6T0 577 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 APPL2Q8NEU8 664 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 OR6B3Q8NGW1 331 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 STK32AQ8WU08 396 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 IFT81Q8WYA0 676 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 TNIP3Q96KP6 325 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 GLT1D1Q96MS3 346 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 TRIM7Q9C029 511 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 SNX25Q9H3E2 840 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 UBN1Q9NPG3 1134 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 KLK14Q9P0G3 267 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 HMGXB4Q9UGU5 601 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 TSPAN16Q9UKR8 245 aa11.15□□□□□ -0.62
VIPAS39-203ENST00000448935 BHMG1C9JSJ3 638 aaPredicted RBP11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 ZNF623O75123 536 aa11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 CTSHP09668 335 aa11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 MYBL2P10244 700 aa11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 PAX3P23760 479 aa11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 CARSP49589 748 aaKnown RBP11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 ACLYP53396 1101 aa11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 DRG2P55039 364 aaKnown RBP11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 RPL7AP62424 266 aaKnown RBP11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 HTRA3P83110 453 aa11.14□□□□□ -0.63
VIPAS39-203ENST00000448935 GUCA2AQ02747 115 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms