RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 ZFPM2Q8WW38 1151 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 CASKIN2Q8WXE0 1202 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 ATP2A3Q93084 1043 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 SNF8Q96H20 258 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 PBKQ96KB5 322 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 TCF12Q99081 682 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 MAP3K14Q99558 947 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 CDX2Q99626 313 aaPredicted RBP2.91□□□□□ -1.94
LIG4-203ENST00000442234 NUDT12Q9BQG2 462 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 AIFM2Q9BRQ8 373 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 DCUN1D5Q9BTE7 237 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 TBC1D10AQ9BXI6 508 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 LRRC2Q9BYS8 371 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 TRIM55Q9BYV6 548 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 PITPNM3Q9BZ71 974 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 TM6SF1Q9BZW5 370 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 INO80BQ9C086 356 aaPredicted RBP2.91□□□□□ -1.94
LIG4-203ENST00000442234 SERHL2Q9H4I8 314 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 ZNF287Q9HBT7 754 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 RBM12Q9NTZ6 932 aaKnown RBP2.91□□□□□ -1.94
LIG4-203ENST00000442234 TAB2Q9NYJ8 693 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 TBC1D14Q9P2M4 693 aa2.91□□□□□ -1.94
LIG4-203ENST00000442234 CNOT8Q9UFF9 292 aaKnown RBP2.91□□□□□ -1.94
LIG4-203ENST00000442234 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.91□□□□□ -1.94
LIG4-203ENST00000442234 COL3A1P02461 1466 aaPredicted RBP2.91□□□□□ -1.94
LIG4-203ENST00000442234 H3BUI4 141 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 DYNC1LI2O43237 492 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 EPN2O95208 641 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 GLI1P08151 1106 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 MYL3P08590 195 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CALM1P0DP23 149 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CALM2P0DP24 149 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CALM3P0DP25 149 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 PCP11498 1178 aaKnown RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 MX2P20592 715 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 GNA11P29992 359 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CCND3P30281 292 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 ADSLP30566 484 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 RCVRNP35243 200 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 ACADSBP45954 432 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 AP3M2P53677 418 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 POLGP54098 1239 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 ESRRGP62508 458 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 OLR1P78380 273 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 IRX4P78413 519 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CYP27A1Q02318 531 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 ZNF844Q08AG5 666 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 PPP2R5CQ13362 524 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 THOC5Q13769 683 aaKnown RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 KRT32Q14532 448 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 BCL2A1Q16548 175 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 PARP6Q2NL67 630 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 MFSD14CQ5VZR4 134 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 FAM109BQ6ICB4 259 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 BLOC1S3Q6QNY0 202 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 LYPD8Q6UX82 237 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 GPR141Q7Z602 305 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 TLK2Q86UE8 772 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SCUBE3Q8IX30 993 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 FAM160A2Q8N612 972 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 DTX3Q8N9I9 347 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SEPT1Q8WYJ6 367 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 NCSTNQ92542 709 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SGCDQ92629 289 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 IFT43Q96FT9 208 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 NOX5Q96PH1 765 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 VPS35Q96QK1 796 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CRAMP1Q96RY5 1269 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 CHP1Q99653 195 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 IFIH1Q9BYX4 1025 aaKnown RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.9□□□□□ -1.944e-6■■■■■ 37.9
LIG4-203ENST00000442234 OSBPL3Q9H4L5 887 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 DENND2DQ9H6A0 471 aaPredicted RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 AZI2Q9H6S1 392 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SMYD3Q9H7B4 428 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SPC25Q9HBM1 224 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 TRIM39Q9HCM9 518 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 ATP8A2Q9NTI2 1148 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 TXNDC16Q9P2K2 825 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 UVRAGQ9P2Y5 699 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 HSFX1Q9UBD0 423 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 HMGXB4Q9UGU5 601 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SRRDQ9UH36 339 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 DAPK2Q9UIK4 370 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 DBNLQ9UJU6 430 aaKnown RBP2.9□□□□□ -1.94
LIG4-203ENST00000442234 DMTF1Q9Y222 760 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 AK5Q9Y6K8 562 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 SLC4A4Q9Y6R1 1079 aa2.9□□□□□ -1.94
LIG4-203ENST00000442234 RGPD8O14715 1765 aaPredicted RBP2.9□□□□□ -1.95
LIG4-203ENST00000442234 CD163L1Q9NR16 1453 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.9□□□□□ -1.95
LIG4-203ENST00000442234 SMCO2A6NFE2 343 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 E9PBE3 544 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 PSMD11O00231 422 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 MUSKO15146 869 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 ADAM23O75077 832 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 ZBED4O75132 1171 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 ARHGEF15O94989 841 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 MOCS3O95396 460 aa2.9□□□□□ -1.95
LIG4-203ENST00000442234 PSMG1O95456 288 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms