RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 PARNO95453 639 aaKnown RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 CYB5D1Q6P9G0 228 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 SLC24A5Q71RS6 500 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 CREG2Q8IUH2 290 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 RAB3IL1Q8TBN0 382 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 DSEQ9UL01 958 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 PHF20L1A8MW92 1017 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 F5H423 210 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 H0Y626 953 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 SYNCRIPO60506 623 aaKnown RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 PLA2G6O60733 806 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 PDGFRAP16234 1089 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 FRMD5Q7Z6J6 570 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 TNFRSF25Q93038 417 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 PABPC5Q96DU9 382 aaKnown RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 SH3GL3Q99963 347 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 FAM105AQ9NUU6 356 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 SF3B1O75533 1304 aaKnown RBP eCLIP11.16□□□□□ -0.626e-6■■■■■ 114.9
TCOF1-204ENST00000427724 PODXLO00592 558 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 PPP1R12AO14974 1030 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SUN1O94901 812 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 ENDOD1O94919 500 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 ECEL1O95672 775 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 JAG1P78504 1218 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 MDH1BQ5I0G3 518 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 KIAA1755Q5JYT7 1200 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 OLFML2BQ68BL8 750 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 ENOSF1Q7L5Y1 443 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 KCNK18Q7Z418 384 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 RGL4Q8IZJ4 473 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 MCUR1Q96AQ8 359 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 RMDN1Q96DB5 314 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 CYFIP2Q96F07 1278 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SYT15Q9BQS2 421 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 TLR10Q9BXR5 811 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 CHORDC1Q9UHD1 332 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SLC45A1Q9Y2W3 748 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SLC12A8A0AV02 714 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 ZBED1O96006 694 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 CKBP12277 381 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 OR1D2P34982 312 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SULT1E1P49888 294 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 EIF3BP55884 814 aaKnown RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 PLD1Q13393 1074 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 KCTD19Q17RG1 926 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SLC39A12Q504Y0 691 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 KLHDC7AQ5VTJ3 777 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 KDELC2Q7Z4H8 507 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 PALM2Q8IXS6 379 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SGSM3Q96HU1 749 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 RUNDC3BQ96NL0 473 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 PNMA5Q96PV4 448 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 CNOT10Q9H9A5 744 aaKnown RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 BLOC1S4Q9NUP1 217 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SETD1AO15047 1707 aaKnown RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 DFFAO00273 331 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 GLUD1P00367 558 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 MCF2P10911 925 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 PMLP29590 882 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 ATICP31939 592 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 TUFMP49411 452 aaKnown RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 HSD17B4P51659 736 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 STILQ15468 1287 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 USP41Q3LFD5 358 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SCFD1Q8WVM8 642 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SMG7Q92540 1137 aaKnown RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 ALKBH8Q96BT7 664 aaKnown RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 RPRD1AQ96P16 312 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.15□□□□□ -0.62
TCOF1-204ENST00000427724 USH1CQ9Y6N9 552 aa11.15□□□□□ -0.62
TCOF1-204ENST00000427724 RGPD2P0DJD1 1756 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 SYF2O95926 243 aaKnown RBP11.15□□□□□ -0.63
TCOF1-204ENST00000427724 LHX1P48742 406 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 DEUP1Q05D60 604 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 GOLGA7BQ2TAP0 167 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 CCDC149Q6ZUS6 474 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 APTXQ7Z2E3 356 aaKnown RBP11.15□□□□□ -0.63
TCOF1-204ENST00000427724 VPS52Q8N1B4 723 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 TSEN2Q8NCE0 465 aaKnown RBP11.15□□□□□ -0.63
TCOF1-204ENST00000427724 PLEKHA5Q9HAU0 1116 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 PLA2G4CQ9UP65 541 aa11.15□□□□□ -0.63
TCOF1-204ENST00000427724 ADAMTS3O15072 1205 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 FAM153BP0C7A2 387 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 KRT3P12035 628 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 FMO5P49326 533 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 MYL6P60660 151 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 BASP1P80723 227 aaKnown RBP11.14□□□□□ -0.63
TCOF1-204ENST00000427724 GPM6BQ13491 265 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 GIT2Q14161 759 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 FAM153CQ494X1 144 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 CHRDL2Q6WN34 429 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 RHOT2Q8IXI1 618 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 LRRC43Q8N309 656 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 RFFLQ8WZ73 363 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 IFT43Q96FT9 208 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 CALR3Q96L12 384 aaKnown RBP11.14□□□□□ -0.63
TCOF1-204ENST00000427724 SENP8Q96LD8 212 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 EPAS1Q99814 870 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 COL20A1Q9P218 1284 aa11.14□□□□□ -0.63
TCOF1-204ENST00000427724 FAM153AQ9UHL3 310 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms